Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03312 ATGGCACCAAGAAAGGATGGAAAAACAAAGAAAATAATGAATAGAGGTGCATGGACCACAGAGGAAGATCAAAAGCTAGCACAATGTATTCAAACTCATGGTGCTAAGAAGTGGAAAACTGTTTCAATCAAATCAGGTTTGAATAGGTGTGGAAAAAGTTGTAGACTAAGATGGTTGAATTATCTTAGACCTAATATCAAGAGAGGGAACATATCAGAAGAAGAAGAGGATTTGATTCTTAGACTTCACACACTTCTTGGTAACAGGTGGTCTTTGATAGCTGGGAGGCTACCGGGACGAACAGATAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTGAATCAAATAGAGGAAAAACCAGAAACTTCCACTACACAAGAAACTATAGCCCAGGACAATGTTGTTGAGGATAGTGCTATATTAGAGAATAAAGATTCAGTTAATGGAAGTATTGATTCAGATGTTATCTTTGATGTGAATGAATTCTTAGACTTTTCCACTGAAGAATCATATGGGTTTGATTGGGTGAATAAATTCTTGGAGTTAGATCAGATTCAGTTTCTTGAGAACACAGAAAGATCTGAGTGA 600 0.3567 MAPRKDGKTKKIMNRGAWTTEEDQKLAQCIQTHGAKKWKTVSIKSGLNRCGKSCRLRWLNYLRPNIKRGNISEEEEDLILRLHTLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQIEEKPETSTTQETIAQDNVVEDSAILENKDSVNGSIDSDVIFDVNEFLDFSTEESYGFDWVNKFLELDQIQFLENTERSE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03312 199 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Trre15g03312 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Trre15g03312 199 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre15g03312 199 Gene3D - 15 67 - -
Trre15g03312 199 CDD SANT 72 113 IPR001005 -
Trre15g03312 199 Gene3D - 71 141 - -
Trre15g03312 199 SMART sant 14 64 IPR001005 -
Trre15g03312 199 SMART sant 67 115 IPR001005 -
Trre15g03312 199 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Trre15g03312 199 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 9 137 - -
Trre15g03312 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre15g03312 199 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Trre15g03312 199 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trre15g03312 199 CDD SANT 17 62 IPR001005 -
Trre15g03312 199 FunFam MYB-related transcription factor 14 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03312 Trre-Chr15 32879889 32880830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03312 9 183 MYB Transcription Factor Family AT3G13540 46.774 6.06e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g03312 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03312 K09422 - gmx:100799575 293.893