Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03300 ATGGAAAGACACAAATGCAAGCTATGTTCAAGAACATTTGGTAATGGAAGAGCACTTGGTGGTCACATGAAAGCTCATCTTGCTACAATTAAGTCTCAAAAACAACAATTCACTCAATTTTCTTCTTTCTCATCATCTGAATCAGAATCAGAACAAGAAGAAAAAACTCTGATTAATTATGTTTTGAGAGAGAATCCAAAGAAAAGTCTTAAAATTGCAGATCCTGAATTTTCTTTCATACCTGATCAGACTGAGTCTGTTATTGTTCAAGACAGAGAAAGTGAGACTGAGTCAAAGAACAACCCGACTCGTCAACAACGATCCAAACGGAACAGAAAACAGAACAACAATAACAGCAACAACAACAACCAGAATTTTCAAGAACGGAAAAAATCAAAGTCGAGTTTTATGATGTTAACAACAACACCACCACCACCATCATTCAATGATCAAGAACCTGTTAGTTCAGTTTCTGATACTTCACCTGAAGAAGATGTTGCTATGTGTCTCATGATGCTTTCGAGAGATAAATGGAGTAGAGAGATGAATATTAACAATGTGGTTGAAGAAGAAGATGAAGAGGGATCGGTGGAGAAAATATCGAAAGTGAAGTTATTGAAACGAGTTCGTGGGAAACATTTATGTGAAAATTGTAGAAAATCATTTCGATCTTCGAGAGCATTGGGGAGTCATCTAAGTGTTTGTTGTCGCAACGAAGCGAAGAATGGTAATGGTAATCGTAACGATGATAAGATTTTTGAATGTCCATTTTGTTTTAAAGTTTTTGGTTCTGGTCAAGCACTTGGTGGTCACAAGAGATCTCATTTCATGATCCCTTCTTCATCAAATTCTACTGCTAATGTTAATGCTAATGCTAATGCTGATGCCGATGCTGATGGTGATGCTTCTGTTAGATTCAAAGAGAGTTTTATAGATCTCAATTTGCCGGCTCCACTCGAAGAAGAAGAAGAAGATGATGATCTTAGTGTTGTTTCTGATGCCTAA 1005 0.3672 MERHKCKLCSRTFGNGRALGGHMKAHLATIKSQKQQFTQFSSFSSSESESEQEEKTLINYVLRENPKKSLKIADPEFSFIPDQTESVIVQDRESETESKNNPTRQQRSKRNRKQNNNNSNNNNQNFQERKKSKSSFMMLTTTPPPPSFNDQEPVSSVSDTSPEEDVAMCLMMLSRDKWSREMNINNVVEEEDEEGSVEKISKVKLLKRVRGKHLCENCRKSFRSSRALGSHLSVCCRNEAKNGNGNRNDDKIFECPFCFKVFGSGQALGGHKRSHFMIPSSSNSTANVNANANADADADGDASVRFKESFIDLNLPAPLEEEEEDDDLSVVSDA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03300 334 MobiDBLite consensus disorder prediction 315 334 - -
Trre15g03300 334 Coils Coil 109 129 - -
Trre15g03300 334 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Trre15g03300 334 MobiDBLite consensus disorder prediction 112 162 - -
Trre15g03300 334 MobiDBLite consensus disorder prediction 83 162 - -
Trre15g03300 334 SMART c2h2final6 4 26 IPR013087 -
Trre15g03300 334 SMART c2h2final6 253 275 IPR013087 -
Trre15g03300 334 SMART c2h2final6 213 233 IPR013087 -
Trre15g03300 334 MobiDBLite consensus disorder prediction 317 334 - -
Trre15g03300 334 SUPERFAMILY beta-beta-alpha zinc fingers 213 275 IPR036236 -
Trre15g03300 334 Pfam C2H2-type zinc finger 3 28 - -
Trre15g03300 334 Pfam C2H2-type zinc finger 253 275 - -
Trre15g03300 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 275 IPR013087 -
Trre15g03300 334 ProSitePatterns Zinc finger C2H2 type domain signature. 255 275 IPR013087 -
Trre15g03300 334 MobiDBLite consensus disorder prediction 88 104 - -
Trre15g03300 334 Gene3D Classic Zinc Finger 210 275 - -
Trre15g03300 334 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 333 IPR044303 GO:0006355
Trre15g03300 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03300 Trre-Chr15 32407396 32408400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03300 1 331 C2H2 Transcription Factor Family AT3G60580 36.047 3.07e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre15g03300 zf-C2H2_6 1.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03300 - - tpra:123884584 435.261