LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g03278	ATGCTACGTCGACTCCTATTGTCAACAAAAACCAACCTTTTCCAAAACCCTAACCACCCTTTATCTTCTTCTAAACTAACCTTCATTCGAACCATGAGTTCAACCTCCTCAGAGCGCATGTTTCAGCTCAAGCTTGACCCTTTAACCGGTAACTCCGAATGGGTCATCATCGAAGAAAACAACAACGACGAAGAACAAAGCTTCAACCAACCCCTTCTCGCCACAACATCGTATTTAGACATGCTCAATGATTCAACCAGAAACACAGCATTTCGTCAAGCCATTGAAAAAACAGTAACCAAACCTTGTCACGTTCTCGATATCGGTGCTGGAACTGGGTTGCTATCGATGATGGCTTCACGAGCTATGAATGGGAAAGGAACGGTAACTGCTTGTGAATCTTATCTTCCAATGGTGAAGTTGATGAAGAAAGTTATGCGACTTAATGGGATGGAGGGAAGAATCAAAGTTTTCAATAAGCGCTCTGATGAACTTGAAGTTGGGATTGATATATCTTCGCGTGCTGATGTTCTTGTGAGCGAGATATTAGATTCAGAGTTATTGGGTGAGGGGCTTATACCAACCCTACAACATGCGCATGACAATTTGTTGGTGGAAAACCCTCTAACTGTACCATATCGAGCAACTACATATGGACAGCTAGTTGAAAGCACTTTCTTATGGCGCTTGCATGATTTGCGTAGCAATGAGGCTGGTGCATCTGATGGCATTCGACTTGCCCCTCCTGGACTTGAAAATGTTATAGGTGTAAAACGTCAGCAATATGCCATGCATTGCGATCCAATAGGAGAAGAACTGAAACCGCTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTACGGCGAAACTGACCTATGCATAAAGGCAACTGATGATGGCAGAGTTCATGCTGTTGTCTCTTGGTGGGTACTTCAACTTGATCGCGAGGGGACAATTTATTATTCCACGGCTCCTAGGTGGATAAGATCATCAACAACTACAAGTGAGGATTTTGAATGGTGCGACCACTGGAAACAGTGTGTTTGGTTTGTTCCAGGGAGTGGTATATCCATATTCAAAGGGGGAGAAATTAATTTACATGCTACTCATGATGATATTAGTATCTCATATAATTTAAATACTCAAGTGTCAACAACTGAGATTTTGCCTGATGGGTTAACGACCGGAGATTTCCAGCTTTTAATTCCTCCAGAAAGGGCTGCAATCTATGGAGACAAAGGATGGAGGCTTTCAATGTTGAAAGCAATAAAAAGTGTGGGAAGAGGTCACTTGTTATGCTTGGTTGCAGATGATAGTGTGTATTTGCCTCTTCTTGTTGCAAAGCTTTCAGAAGCACCAAATGTAATATCATCTTTTTCGAGGCTGAAGGAAAAGAGCCGCCAATATTTGCAAGCTGCTGTCCGTGCAAATAACCTGCCACCTAATTGCATAAAAACTGTTGAAAAAGGGGTGAAGCAGTTAACCATGCATGATACAAACCAGAAAAAGGTTGACCTGTTAATAGCAGAACCTTTCTATTTTGGACATGATGGCATGCTTCCATGGCAGAATCTGCGGTTTTGGAAGGATCGTACAACACTTGATTATATCCTCTCCGAAGATGCTATAATAATTCCCAGTAAAGGAATTTTGAGGGCTTGTGCCATCTATCTTCCTGATCTTTGGAAAAGTCGTTCCTGCTTGAGTACGATAGAAGGTTTTGACCATTCTGGTGTAAACACTACATTGGGAGCTTGCGGTCATCTACCCAAATTGGAAGAGGGTCCATGTCTGCCTTTTTCTCTTTGGCAGTGTGGAGAACTTGATGTGCTTAGTGAGACATTTGATGTGATGGAGTTTGATTTCACAAAACAAATATGCCAATGTGAAGGAAAATCCCAGGTTCAATTCATGAAGACTGGAGTATGTCATGGGTTTGCGCTGTGGATTGACTATGTGATGGATTCACAAAATTCTGTTGTGATATCAACTGGTCCAGATAAGAGATATTGGAAACAAGGAATAAAGCTTCTTGCAACACCTAGAACTGTAGGACCCCAAGGATCATTAAATGTCCAAGCATGTTCTGCAGATATTGAAGCATCTTTTAATCCATCAAATGGGGAACTCAAAATTATACTTGATTTCTTATGA	2175	0.4143	MLRRLLLSTKTNLFQNPNHPLSSSKLTFIRTMSSTSSERMFQLKLDPLTGNSEWVIIEENNNDEEQSFNQPLLATTSYLDMLNDSTRNTAFRQAIEKTVTKPCHVLDIGAGTGLLSMMASRAMNGKGTVTACESYLPMVKLMKKVMRLNGMEGRIKVFNKRSDELEVGIDISSRADVLVSEILDSELLGEGLIPTLQHAHDNLLVENPLTVPYRATTYGQLVESTFLWRLHDLRSNEAGASDGIRLAPPGLENVIGVKRQQYAMHCDPIGEELKPLSEPFKIFEFDFWKRPESYGETDLCIKATDDGRVHAVVSWWVLQLDREGTIYYSTAPRWIRSSTTTSEDFEWCDHWKQCVWFVPGSGISIFKGGEINLHATHDDISISYNLNTQVSTTEILPDGLTTGDFQLLIPPERAAIYGDKGWRLSMLKAIKSVGRGHLLCLVADDSVYLPLLVAKLSEAPNVISSFSRLKEKSRQYLQAAVRANNLPPNCIKTVEKGVKQLTMHDTNQKKVDLLIAEPFYFGHDGMLPWQNLRFWKDRTTLDYILSEDAIIIPSKGILRACAIYLPDLWKSRSCLSTIEGFDHSGVNTTLGACGHLPKLEEGPCLPFSLWQCGELDVLSETFDVMEFDFTKQICQCEGKSQVQFMKTGVCHGFALWIDYVMDSQNSVVISTGPDKRYWKQGIKLLATPRTVGPQGSLNVQACSADIEASFNPSNGELKIILDFL	724

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g03278	724	Gene3D	-	214	397	-	-
	Trre15g03278	724	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	78	376	IPR029063	-
	Trre15g03278	724	FunFam	Protein arginine N-methyltransferase	71	213	-	-
	Trre15g03278	724	Gene3D	-	557	723	-	-
	Trre15g03278	724	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	393	724	IPR025799	GO:0016274\|GO:0018216
	Trre15g03278	724	FunFam	Protein arginine N-methyltransferase 7	405	553	-	-
	Trre15g03278	724	FunFam	Protein arginine N-methyltransferase 1.6	214	398	-	-
	Trre15g03278	724	FunFam	Protein arginine N-methyltransferase 1.6	557	723	-	-
	Trre15g03278	724	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	58	383	IPR025799	GO:0016274\|GO:0018216
	Trre15g03278	724	PANTHER	PROTEIN ARGININE N-METHYLTRANSFERASE	475	700	IPR025799	GO:0016274\|GO:0018216
	Trre15g03278	724	PIRSF	Arg_N-mtase	38	720	IPR014644	GO:0006479\|GO:0008168
	Trre15g03278	724	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	473	700	IPR029063	-
	Trre15g03278	724	Gene3D	Vaccinia Virus protein VP39	71	213	IPR029063	-
	Trre15g03278	724	Gene3D	Vaccinia Virus protein VP39	406	553	IPR029063	-
	Trre15g03278	724	Pfam	Ribosomal protein L11 methyltransferase (PrmA)	93	185	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g03278	Trre-Chr15	31686459	31691370	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g03278	78	218	C2H2 Transcription Factor Family	AT3G12270	32.000	2.06e-11	65.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g03278	K11438		-	gmx:100785846	1147.5