Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03263 ATGGGAAAGATTTTTGATACGCTTGCCGCGGTCAATAATGATAGAGATTCATGGTGTTTTAAAGTTCGTGTTATACGCTTGTGGACTGTGTACTCAACAACAAAGTCTGGCCACTTGAACTCCCTCGAGATGATCTTAATTGATGAAAAGGGCACTAAAATTCATGCATCTATTACTCACAAGCTGCTCTATTTATTTCGACACAAGATATTTGAAGGGGTTGTGTATAAGATGTCAAATTTTAAAGTTGTACTGGAAGAAGGAGTCATTCGTACAACTTCTCATCCTTATCAACTACATTTTCTTTACAAAACTAAAGTTGATAGATGTGAAGATAGTTCAATAGATATGTTGGGATTGTCATTAACTAAAATTGGAAATATTTGTGGTTATAGTCCTGATCATGACTTTTTAATTGATGTTGCTGGATTGGTGTTGCGGACCTCATCGGAGAGGGAATGTGTTCGTGATGGAAAAACTACCAAAGAGGTTGTGCTTCATATGTTTGATAATAGTGGTAACTGTGAATGTTTGTTGTCTGGGATTTATGTTGATGAGTTTCAAAGCTTGGTTGATAGAGGTGGCGGCGGACTTCCTATTATAGTCATTCAATTTGCAAAAATTCGATATGAACAAGGGAAAATATCCATTGAAAATTATTTGAATGTCACTAGGATTTTGATCCATCCTACTATACCAGAAATCATTGCTTTCAAAGAAAGCCTTGCAATCGTTGGAGTTGTTTGTGTTGGGCCTCACACAAGACCGTCTCTTGACGAAGATTTCTTAATGAGGAATCCACCTATTTCGATAGCTAACTTGTGTACAACAAACAAAGAAGGATATTATATTGTTGGGGGTGTAATTGACTCCTTGGTGGAGCCTGAACAGTGGTGGTATCTTGCTTGTTCTTGCCATGCAAGCCTATCTCCTAATGCTAACGGTTTTTATTGCAACGATTGTGACAAAGATGTCACCCATATGATTCCAATGTTTAAATTGAAACTTAGTGTTAAAGACGGATCTGGACAGGAGATTTTCCTCCTTTTTGATCAAGAGATGTATGAATTATTAGGAAAACATTGCCACGAATTGCTTACAGTGCATGAGGGAGACAATTCTCATTGCTATCCCTTAGAGTTGGATAATCTCAAAGGTAGAAAATTATTATTAAAAATTGAGAAAAGTAAAATCGATGGCTATGATAATTTTGAAAAGCCTTATAGAGTTGAGCGAATCTGCCAAGATTTATCTCTTATTGATGCCTTCGATTCGCCCAATAAGGCTCGAGCAATGCAAGTCCGCGTTCGAGCACCAAATGCCCTGCGAGCATTCTAA 1338 0.3744 MGKIFDTLAAVNNDRDSWCFKVRVIRLWTVYSTTKSGHLNSLEMILIDEKGTKIHASITHKLLYLFRHKIFEGVVYKMSNFKVVLEEGVIRTTSHPYQLHFLYKTKVDRCEDSSIDMLGLSLTKIGNICGYSPDHDFLIDVAGLVLRTSSERECVRDGKTTKEVVLHMFDNSGNCECLLSGIYVDEFQSLVDRGGGGLPIIVIQFAKIRYEQGKISIENYLNVTRILIHPTIPEIIAFKESLAIVGVVCVGPHTRPSLDEDFLMRNPPISIANLCTTNKEGYYIVGGVIDSLVEPEQWWYLACSCHASLSPNANGFYCNDCDKDVTHMIPMFKLKLSVKDGSGQEIFLLFDQEMYELLGKHCHELLTVHEGDNSHCYPLELDNLKGRKLLLKIEKSKIDGYDNFEKPYRVERICQDLSLIDAFDSPNKARAMQVRVRAPNALRAF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03263 445 CDD RPA1_DBD_C 273 413 IPR047192 -
Trre15g03263 445 Pfam Domain of unknown function DUF223 43 125 IPR003871 -
Trre15g03263 445 SUPERFAMILY Nucleic acid-binding proteins 120 244 IPR012340 -
Trre15g03263 445 SUPERFAMILY Nucleic acid-binding proteins 273 404 IPR012340 -
Trre15g03263 445 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Trre15g03263 445 Gene3D - 267 423 IPR012340 -
Trre15g03263 445 Gene3D - 7 113 IPR012340 -
Trre15g03263 445 PANTHER OS03G0429900 PROTEIN 296 396 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre15g03263 445 Pfam Replication factor-A C terminal domain 282 403 IPR013955 -
Trre15g03263 445 Gene3D - 114 246 IPR012340 -
Trre15g03263 445 CDD RPA1_DBD_A_like 21 107 - -
Trre15g03263 445 CDD RPA1_DBD_B_like 140 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03263 Trre-Chr15 31505902 31507912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03263 8 372 Core DNA Replication Machinery Family AT5G08020 23.210 1.39e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03263 - - tpra:123893724 429.869