Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03258 ATGGTGTACAACGAGAAAGCTAATGTTGATTCCAACTTTGATGATGTCGCCGATATAGCCTCTGGTAAGGACAATTTCTGTATTAGGGTTAGGGTTGTGCGTTTGTGGAAGGTCCCTGCTTTCCTAAAACCTTCTGAGTATAGCTCTCTTGAGAGGGTTCTCATTGATGAAAAGGGTGGAAAGATTCATGCCTCCATTAGAAGGCAGCTGATGTATATGTATGAAACCAAGCTCAAAGAGGGGCAGGTTTATGAGATCTCCAACTTTGCTATTTTCCCTCAGAGTGATGTTATTGGCGTTGTTACTGGTATGTCCGCTGAGAGAGAATATGTTAGGGATGGCAAGATCACTAAGATGATCATTGTTGAGCTTACTGATCATAGTGGTAAGTGTGAATGTGCTCTTTTTGGTGATTACGTTGATGAGTTGAATAAGAAGATTGGTAAAACTTCTATTAGGTTGCCCATTGTTATCATTCAGTTTGCCAAAGTTAAAATTTTCAGAGACAAGGTATCTATTCAAAATGTGATTAACACTACTAGGATTTTCGTTAATCCAGATCTTCCTGAGGTCGAGACATTCAAGAATAGCATTGTTGTTCATGGCATTGAGGTGGATGCCACTGTTCCATTGATTGGGGAGTTTAAAGTAAAGCTTGAAGTCACTGATGGGAAATCTAATGGGGTGTTTGTTTTGTTTGATTCCAACATGAGTTACCTCATGGAAAAGCCGTGTTCCTTTTTTGTTGCACAATCTAAGGCAATTAATTCTGGCCCCCATCCGGTTGAGTTTGATAGTTTGGCTGGTAAGAAGATGTTGTTCATTGTTGATAGTGTTTCCAATCAGGCTGCAACCTCTGATGGTTCGTTCAGGGTGAAGAGGGTTTGTATGGAGTCTAAGATTATTGATGCATTCTGTGCTCAATGTCCATCTAGCAGTCACGTAAAGTCCCTGGCTACTCCTGTGGATCTGTCTTCCGCGTCTGAAAGTTGTGGCAGTGATGATGGTGATGATCTTGAGTCCTCTAAGTTTGTTGATGATCTTATAGTTACTCCACCGATGGCTCGCGTTGATGACGACACAGATAGTGATGGTCCTGCTGTGTTTAAAAGAAATTTGGCTAAAGATTTTGATCGGGCATCCAAGTGCCGGTCCAATAAGCTTGAGACATTCATGGGTGGATTGCCCTTTAAGAAACTTCCCGAGTTGTTTGATTCTGTGTTTGATGGTCTTGTTATTGTCCCCGTGTGGTTTGATTCCGTTGTCGAAGGTGTCGACGTGTGGTTTAAGGGAGAACAAGTAGACAGTACTCCGAGATTTAGGCTGAAATTGAAGGTTAGGCATGGTGCTCATGCAGCTGTCTTTGCATTGTTTGACAAGGATGTTCAGAAATTGGCTATTGAGACATGTCCTTTGCTACTCTCTATGGGAGAGAGTTCTTCCCTGTATCCAGATGAGATGGAATGTTTTTATGGTGATGCATATCTTTGCAAAGTTGGAAAAAGGGATCCTGTTGACAGTGATGCATTGCCGGCATTTGATGTTGTGTCCATTTGCAATGAGATCGAGGTTGTTAATATGTTTTTTGATGAGTTTGTCCCTGATGTTGATGCTTTTATTGGAGATCCAGCTTTGGGTGCGTCTAGGGAGTTAAGCGATGGTCATAATGTTTATCACTCTTCGTGTGAATCGTTTGAATCCGCTAATTTTGCCGGTGACTTTATTCAATCACCAAATTCTGTTGATGGTCAGGTTCAATTGGAGTGTGAGGAGGTTGGTGTGGATGACGAGAGGGAGCCCGTTATCCCAATTTCTCCACGCAAGCGTGGTAGAGCATACTCAAGTAGTGGCATGCCTATTTCTATTGGAAAGTTTATTTCTTCCAAGCGAAAGGAGTGTGTCAAGAGGAAGTTGGTGTTCGATGATGATGTTGGACCGGCAAAGGCGAAGAGAAATGTTTCTGGTTTGGATGATTGTGATGATGTTTGA 1989 0.4213 MVYNEKANVDSNFDDVADIASGKDNFCIRVRVVRLWKVPAFLKPSEYSSLERVLIDEKGGKIHASIRRQLMYMYETKLKEGQVYEISNFAIFPQSDVIGVVTGMSAEREYVRDGKITKMIIVELTDHSGKCECALFGDYVDELNKKIGKTSIRLPIVIIQFAKVKIFRDKVSIQNVINTTRIFVNPDLPEVETFKNSIVVHGIEVDATVPLIGEFKVKLEVTDGKSNGVFVLFDSNMSYLMEKPCSFFVAQSKAINSGPHPVEFDSLAGKKMLFIVDSVSNQAATSDGSFRVKRVCMESKIIDAFCAQCPSSSHVKSLATPVDLSSASESCGSDDGDDLESSKFVDDLIVTPPMARVDDDTDSDGPAVFKRNLAKDFDRASKCRSNKLETFMGGLPFKKLPELFDSVFDGLVIVPVWFDSVVEGVDVWFKGEQVDSTPRFRLKLKVRHGAHAAVFALFDKDVQKLAIETCPLLLSMGESSSLYPDEMECFYGDAYLCKVGKRDPVDSDALPAFDVVSICNEIEVVNMFFDEFVPDVDAFIGDPALGASRELSDGHNVYHSSCESFESANFAGDFIQSPNSVDGQVQLECEEVGVDDEREPVIPISPRKRGRAYSSSGMPISIGKFISSKRKECVKRKLVFDDDVGPAKAKRNVSGLDDCDDV 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03258 662 Pfam Domain of unknown function DUF223 53 96 IPR003871 -
Trre15g03258 662 Gene3D - 12 95 IPR012340 -
Trre15g03258 662 CDD RPA1_DBD_A_like 27 89 - -
Trre15g03258 662 Gene3D - 197 304 IPR012340 -
Trre15g03258 662 CDD RPA1_DBD_B_like 96 195 - -
Trre15g03258 662 Gene3D - 96 191 IPR012340 -
Trre15g03258 662 SUPERFAMILY Nucleic acid-binding proteins 12 91 IPR012340 -
Trre15g03258 662 SUPERFAMILY Nucleic acid-binding proteins 95 202 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03258 Trre-Chr15 31453647 31458856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03258 96 195 Core DNA Replication Machinery Family AT2G06510 32.692 2.97e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03258 - - tpra:123904946 285.804