Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03222 ATGTGGTCGTCCGATGGATCTGATGATGAGAGCATAATTATTCCTAATCCTAAGGATTCCTATCAATATGTGGAAACAGTTGGTCCAAGTGAGGAGGAGGATAATGTCAGCAACTGTGACATACCTAAATTTCGAAATGACCGTGTATTTGGTTGGGAACTTCTCATCACCAGGGCTTATGCAAGCTTGAAAAAACAGCAGGTTTTGCATGTACCAAATAAGTGCTTCAGGCGTGTTCTTAAGGGTAGGGATAGTATTGTAATTAAAACTCAGCACAATGGAGATAGTATCAGGTGCACTATGATAACCTATGAAAGAAAGGAAGGCAAGCAGGAAATGTACTTGAGTAAAGGATGGTTCGAGTTTGTTAGTGTTAACAACCTTAAGAGGGGAGATAAGTTGCGGTTCCAACTCTCAAATCCACCCGATGTTATGTTTGTGGAGATTATCCGAGGAAAACGGTCACGAAGAAATATATCTAAGTAG 486 0.4053 MWSSDGSDDESIIIPNPKDSYQYVETVGPSEEEDNVSNCDIPKFRNDRVFGWELLITRAYASLKKQQVLHVPNKCFRRVLKGRDSIVIKTQHNGDSIRCTMITYERKEGKQEMYLSKGWFEFVSVNNLKRGDKLRFQLSNPPDVMFVEIIRGKRSRRNISK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03222 161 Gene3D - 42 153 IPR015300 -
Trre15g03222 161 Pfam B3 DNA binding domain 63 151 IPR003340 GO:0003677
Trre15g03222 161 CDD B3_DNA 69 151 IPR003340 GO:0003677
Trre15g03222 161 ProSiteProfiles B3 DNA-binding domain profile. 54 153 IPR003340 GO:0003677
Trre15g03222 161 SUPERFAMILY DNA-binding pseudobarrel domain 63 150 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03222 Trre-Chr15 30756581 30757147 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g03222 B3 5.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03222 - K23514 tpra:123886203 124.02