Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03195 ATGAGAACAATCATTTTTCAATCTGATATGCGGGCCAATGACCCTGTTGGTGGTTGTTACAAATATATTCAAGATCTTCAAGCCCAAATTGAATATTGTAAAATAGAACTTGATCTTGTTCTTCAACAACTCGCGGTTTTTCGAGGACAATCTCATCAACAACAACAACAAGTAGTTAATTATGGTGATCAAGTTATTATGAATTCAGATTCATTGTTAGGTTTTTATAATCCACCTGGATCTATTGTTTCTGCTACCGCACTGGAGAATTATCATTACAATGTTCAACAACAGGTTTTGCCACAATTGCAAGAACAAGAACAAGAAAAACACATTATGATGCACGAAAGTAATAGTAGTAGTAGTAGTATTGTTAATAGTACTACTCCTTTGCAACAACATATTAATAATTGGGGGGCTATGCAAAATTCTATTTCTCTATCATCTTTGTCATTGCATGGACATAGTAGTAATGCTAGTGATGAGTATGATAAGCCAATTCTTGAAATACCTTGCGAAGAAAGAAATGAATTAGGGTTCGACTCCGGAGAAATACTTCACCACAGTGATGAAGCAATTTTGTTTAAGATAGATGATGGAGTAATTAAAGCAGAGGGTGACTACATTCAACAAACACAAGCTCAAGCACAAGATCATGATCTAAAAGGAGCAGCTACATTGTTTACTCTCACAAATTGTACTAGTTGA 708 0.3475 MRTIIFQSDMRANDPVGGCYKYIQDLQAQIEYCKIELDLVLQQLAVFRGQSHQQQQQVVNYGDQVIMNSDSLLGFYNPPGSIVSATALENYHYNVQQQVLPQLQEQEQEKHIMMHESNSSSSSIVNSTTPLQQHINNWGAMQNSISLSSLSLHGHSSNASDEYDKPILEIPCEERNELGFDSGEILHHSDEAILFKIDDGVIKAEGDYIQQTQAQAQDHDLKGAATLFTLTNCTS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03195 235 ProSiteProfiles LOB domain profile. 1 44 IPR004883 -
Trre15g03195 235 Pfam Lateral organ boundaries (LOB) domain 1 39 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03195 Trre-Chr15 29951790 29953019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03195 1 57 AS2 family AT3G13850 63.158 8.63e-18 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre15g03195 LOB 3.8e-06 No_clan