Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03190 ATGTCATCCTCTTCATTATCCTTGGACCACCTCCCTTCTTCCGAGCAACTTTGTTATGTCCACTGCAACATTTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATTGCACCAATCTTTTACCAGTCAACATGCGTGCATTGCTTCTTCCATCTCCAAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTTGAGGAGATGCCAAACCAAGCTCCAAATTTTCTGATGAACCATACAAATGCACCAAATGAGTTCTCTATGCCTCCAAGGACTGTTGCTGATGAGCTTCCAAGGCCACCAATCATCAACAGACCTCCAGAGAAAAGGCAGAGAGTTCCTTCAGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATAACCCACAGGGAAGCCTTCAGCGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCATTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGATGGAGATGATCAGGTTCTGATGAAAGATGGAGGATTTTATGCTTCAGCTAATCTTGGTGTTTCTCCCTACTAA 642 0.4517 MSSSSLSLDHLPSSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPTHNLLEEMPNQAPNFLMNHTNAPNEFSMPPRTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQDGDDQVLMKDGGFYASANLGVSPY 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03190 213 CDD HMG-box_SF 129 165 - -
Trre15g03190 213 Gene3D High mobility group box domain 120 171 IPR036910 -
Trre15g03190 213 FunFam Axial regulator YABBY 120 191 - -
Trre15g03190 213 SUPERFAMILY HMG-box 119 168 IPR036910 -
Trre15g03190 213 Pfam YABBY protein 13 175 IPR006780 GO:0007275
Trre15g03190 213 PANTHER PROTEIN YABBY 6-RELATED 1 185 IPR006780 GO:0007275
Trre15g03190 213 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03190 Trre-Chr15 29749687 29752833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03190 24 211 C2C2-YABBY Transcription Factor Family AT4G00180 59.330 2.39e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre15g03190 YABBY 1.4e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03190 K25796 - gmx:100798441 389.037