Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03189 ATGTCATCCTCTTCATTATCCTTGGACCACCTCCCTTCTTCCGAGCAACTTTGTTATGTCCACTGCAACATTTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATTGCACCAATCTTTTACCAGTCAACATGCGTGCATTGCTTCTTCCATCTCCAAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTTCAGGAGGAGATGCCAAACCAAGCTCCAAATTTTCTGATGAACCATACAAATGCACCAAATGAGTTCTCTATGCCTCCAAGGACTGTTGCTGATGAGCTTCCAAGGCCACCAATCATCAACAGACAGAAAAGGCAGAGAGTTCCTTCAGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATAACCCACAGGGAAGCCTTCAGCGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCATTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGATGGAGATGATCAGGTTCTGATGAAAGATGGAGGATTTTATGCTTCAGCTAATCTTGGTGTTTCTCCCTACTAA 639 0.4507 MSSSSLSLDHLPSSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPTHNLLQEEMPNQAPNFLMNHTNAPNEFSMPPRTVADELPRPPIINRQKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQDGDDQVLMKDGGFYASANLGVSPY 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03189 212 PANTHER PROTEIN YABBY 6-RELATED 1 184 IPR006780 GO:0007275
Trre15g03189 212 Pfam YABBY protein 13 174 IPR006780 GO:0007275
Trre15g03189 212 CDD HMG-box_SF 128 164 - -
Trre15g03189 212 Gene3D High mobility group box domain 121 171 IPR036910 -
Trre15g03189 212 SUPERFAMILY HMG-box 119 167 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03189 Trre-Chr15 29749687 29752833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03189 24 210 C2C2-YABBY Transcription Factor Family AT4G00180 55.714 3.76e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre15g03189 YABBY 9.8e-67 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03189 K25796 - gmx:100798441 372.859