Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03187 ATGAACACATTTTCACATGTACCCCCGGGATTTCGTTTTCATCCAACTGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAGGTATTGTCTAAAAAGATTGATCTAGATGTCATCAAAGACGTCGATCTCTACAAAATTGAACCATGGGATCTACAAGAATTATGCAAAATAGGGAGTGATGAACAAAATGACTGGTATTTTTTTAGTCATAAGGATAAGAAGTATCCAACAGGAACTCGAACGAATAGAGCGACAAAAGCAGGTTTCTGGAAAGCAACAGGAAGAGATAAAGCAATTTACTCGAAACAATTCCTAGTTGGAATGAGAAAGACTCTAGTGTTTTACAAAGGGCGTGCCCCAAACGGACAAAAATCAGATTGGATCATGCATGAGTATCGCCTAGAAACTAATCAAAATGGAACGTCTCAGGAAGAAGGGTGGGTTGTATGCAGGGTATTCAAGAAAAGAATGACAACAGTACAGAAAATGAGTGAGTATGATCAATCACCATGTAATTGGTATGATGATCAAGTTTCCTTTATGCCTCATCTTGAATCTCCAACTTCAACTAATCCTCACCAAAATTATACTTCATCAACTTATCATTCCTGCAAACCAGAGCTAGAATTAATGCAATACCAACACATTAATGATCATGCTAATTTTATCCAACTTCCACACCTTGAAAGCTCCAAAATCACTCAATCATCAATTATCCCTTATAATAATCATGCTCATGCAAACAATAACATTAATAATGCACAACATATGCAATATTTGCATTACCATCAACAAAATCTTCACTCGATATACGGCGGAGGCGGTGGTGGCAGTAGTAGTACTGGTGGTAATAATGATGAACAAGTTACTGATTGGAGAGTTCTTGATAAATTTGTTGCATCTCAGCTAAGTCATGAAGATAATAACAATAATAGTAATCAAGAACATGTTTCTAATAAAGAAACTAGTTCTTTCTCCAATTCAGCAGCTATACTTCAAGTGGCTGAACAAATTACTCTTCTTGCAAATGGATCAAAAAAGAATGAAGTTTCTGATGAACATGCTTCAACTTCTACCTCCAGTTGCCACATGGAACTATGGAAGTGA 1110 0.3631 MNTFSHVPPGFRFHPTDEELVDYYLRKKVLSKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQFLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGTSQEEGWVVCRVFKKRMTTVQKMSEYDQSPCNWYDDQVSFMPHLESPTSTNPHQNYTSSTYHSCKPELELMQYQHINDHANFIQLPHLESSKITQSSIIPYNNHAHANNNINNAQHMQYLHYHQQNLHSIYGGGGGGSSSTGGNNDEQVTDWRVLDKFVASQLSHEDNNNNSNQEHVSNKETSSFSNSAAILQVAEQITLLANGSKKNEVSDEHASTSTSSCHMELWK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03187 369 FunFam NAC domain-containing protein 16 160 - -
Trre15g03187 369 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Trre15g03187 369 MobiDBLite consensus disorder prediction 305 325 - -
Trre15g03187 369 MobiDBLite consensus disorder prediction 355 369 - -
Trre15g03187 369 MobiDBLite consensus disorder prediction 346 369 - -
Trre15g03187 369 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Trre15g03187 369 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Trre15g03187 369 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Trre15g03187 369 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03187 Trre-Chr15 29720773 29723527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03187 1 369 NAC Transcription Factor Family AT1G12260 55.285 5.94e-138 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre15g03187 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03187 - - gmx:100783529 488.419