Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03183 ATGGCTTCAGAGTCATTTCAAGTAGCCACTTCTTCATTCTCTACTCTCAATGCTTCTTCTCACCGTAAACCAACCCTTCTTTCTCCGGTATGTTTTCGCCCTCAACAACACTCTCGCTCTTTCTCTTCATCTTCATCATCACAATTCTTTGGAACAAGAGCAACTACTCGAATTACTCGAATTAACTCCAATTCATCTCAACTTGGTTCAAGAAGAACAACAAGAAGAAATTTCTCAGTTTTCGCCATGTCTGTTCCTGAAGATGCAAAACGTGCTGTCCCATTGAAGGATTATCGCAACATTGGTATCATGGCTCACATAGACGCTGGAAAGACAACTACAACCGAACGAATTCTTTTCTATACTGGAAGAAACTACAAAATTGGAGAGGTACACGAGGGAACAGCAACAATGGACTGGATGGAACAAGAACAAGAAAGAGGGATTACTATTACTTCTGCTGCAACCACTACATTTTGGGATAAACACAGGATCAACATCATTGATACTCCTGGTCATGTCGACTTCACCTTAGAAGTGGAGCGTGCTCTTAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGTGTGGAACCACAATCAGAAACTGTGTGGAGGCAAGCTGATAGATATGGAGTCCCTCGAATTTGTTTTGTCAATAAAATGGACCGCCTTGGAGCAAATTTTTTCCGAACAATAGATATGATAGTGACAAACTTAGGTGCTAAACCACTTGTACTTCAGCTACCAATCGGTGCAGAAGATACCTTTAAGGGAGTTATTGATCTTGTTAGGATGAAAGCTATAGTTTGGAGTGGAGAAGAGCTTGGCGCCAAGTTTTCTTATGAAGATATACCTGCAGATCTCCTAGATCAGGCTCAGAATTACAGGTCTCAGTTGATAGAAACCGTAGTTGAGTTAGATGACGAAGCTATGGAGAACTACTTGGAAGGAGTTGAACCGGATGAAGAAACTGTAAAAAAATTAATTAGGAAGGGATCCATAGCTGCCACTTTCGTGCCAGTGTTGTGTGGATCAGCTTTCAAAAACAAGGGAGTCCAACCGTTGCTAGATGCTGTAGTGGATTATCTACCATCACCACTTGACGTACCACCAATGAATGGTACCGACCCTGAAAACCCAGAAGCAACAATAGAGAGAATAGCAAGTGACGATGAACCATTTTCTGGACTAGCTTTTAAGATCATGAGTGATTCATTCGTTGGTTCCCTTACATTTGTTAGGGTGTATTCTGGAAAACTAACTGCAGGGTCTTATGTACTCAATTCAAACAAAGGGAAAAAGGAGAGAATCGGTAGACTTCTAGAAATGCACGCAAACAGCAGAGAAGACGTTAAAGTAGCTTTAACCGGGGATATTATTGCTCTTGCTGGTTTAAAAGATACTATAACAGGTGAAACATTGTGTGACCCCGAGCACCCAGTCGTTCTTGAGCGGATGGACTTTCCTGATCCTGTTATTAAGATTGCAATTGAGCCCAAAACTAAAGCTGATATTGACAAGATGGCTGCTGGTTTAGTCAAACTTGCACAAGAAGACCCTTCTTTCCACTTCTCCCGTGATGAAGAGATAAACCAGACAGTGATCGAAGGAATGGGAGAATTGCATCTTGAAATCATTGTCGATCGTCTCAAAAGAGAATATAAGGTAGAAGCTAATGTTGGTGCTCCACAAGTAAACTACAGGGAAAGCATTTCCAAAATCACGGAAGTAAGATATGTGCACAAGAAACAATCAGGCGGACAAGGTCAGTTTGCAGATATAACCGTACGTTTTGAACCCTTGGAACCAGGTAGTGGATATGAATTCAAGAGTGAAATCAAAGGAGGTTCAGTTCCAAAAGAATACGTTCCTGGTGTGGTTAAAGGAATGGAAGAGTGTATGAGCAATGGTGTTCTAGCTGGCTTTCCGGTTGTTGATGTACGTGCAGTACTAGTGGATGGTACTTACCACGATGTGGATTCAAGTGTGTTGGCTTTCCAGTTAGCAGCGAGAGGAGCTTTTCGGGAAGGGATGAGAAAAGCTGGACCGAAAATGCTTGAACCTATAATGAAAGTTGAAGTTGTTACTCCTGAAGAACATTTAGGAGATGTAATCGGTGATCTCAACTCAAGAAGAGGACAGATCAACAGTTTTGGTGACAAACCAGGTGGACTCAAGGTGGTTGATGCACAAGTACCTCTTGCTGAGATGTTTCAGTATGTCAGTACACTAAGAGGGATGACAAAGGGCCGTGCATCTTACTCAATGCAATTAGCGATGTTTGACGTGGTACCTCAACACATTCAGAATCAACTTGCAACAAAGTCGCAAGAAGTTGCTGCTTAA 2358 0.4207 MASESFQVATSSFSTLNASSHRKPTLLSPVCFRPQQHSRSFSSSSSSQFFGTRATTRITRINSNSSQLGSRRTTRRNFSVFAMSVPEDAKRAVPLKDYRNIGIMAHIDAGKTTTTERILFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADRYGVPRICFVNKMDRLGANFFRTIDMIVTNLGAKPLVLQLPIGAEDTFKGVIDLVRMKAIVWSGEELGAKFSYEDIPADLLDQAQNYRSQLIETVVELDDEAMENYLEGVEPDEETVKKLIRKGSIAATFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPMNGTDPENPEATIERIASDDEPFSGLAFKIMSDSFVGSLTFVRVYSGKLTAGSYVLNSNKGKKERIGRLLEMHANSREDVKVALTGDIIALAGLKDTITGETLCDPEHPVVLERMDFPDPVIKIAIEPKTKADIDKMAAGLVKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREYKVEANVGAPQVNYRESISKITEVRYVHKKQSGGQGQFADITVRFEPLEPGSGYEFKSEIKGGSVPKEYVPGVVKGMEECMSNGVLAGFPVVDVRAVLVDGTYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDAQVPLAEMFQYVSTLRGMTKGRASYSMQLAMFDVVPQHIQNQLATKSQEVAA 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03183 785 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 83 781 - -
Trre15g03183 785 SUPERFAMILY EF-G C-terminal domain-like 691 779 IPR035647 -
Trre15g03183 785 SMART EFG_C_a 688 776 IPR000640 -
Trre15g03183 785 CDD EFG_mtEFG_C 691 769 IPR035649 -
Trre15g03183 785 Gene3D - 89 380 IPR027417 -
Trre15g03183 785 CDD EFG_mtEFG_II 398 480 - -
Trre15g03183 785 Gene3D Elongation Factor G (Translational Gtpase), domain 3 496 572 - -
Trre15g03183 785 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 96 371 IPR000795 GO:0003924|GO:0005525
Trre15g03183 785 FunFam Elongation factor G 573 703 - -
Trre15g03183 785 CDD EFG_mtEFG1_IV 571 686 IPR005517 GO:0005525
Trre15g03183 785 Hamap Elongation factor G [fusA]. 94 780 IPR004540 GO:0003746|GO:0005525|GO:0006414
Trre15g03183 785 Gene3D - 573 776 IPR014721 -
Trre15g03183 785 Hamap Elongation factor G, chloroplastic. 88 785 IPR030848 GO:0003746|GO:0006414|GO:0009507
Trre15g03183 785 NCBIfam elongation factor G 91 780 IPR004540 GO:0003746|GO:0005525|GO:0006414
Trre15g03183 785 Coils Coil 293 313 - -
Trre15g03183 785 Gene3D - 692 763 - -
Trre15g03183 785 Pfam Elongation factor G C-terminus 689 775 IPR000640 -
Trre15g03183 785 Gene3D Translation factors 381 495 - -
Trre15g03183 785 Pfam Elongation factor Tu GTP binding domain 97 369 IPR000795 GO:0003924|GO:0005525
Trre15g03183 785 Pfam Elongation factor G, domain IV 567 685 IPR005517 GO:0005525
Trre15g03183 785 PRINTS GTP-binding elongation factor signature 146 154 IPR000795 GO:0003924|GO:0005525
Trre15g03183 785 PRINTS GTP-binding elongation factor signature 182 193 IPR000795 GO:0003924|GO:0005525
Trre15g03183 785 PRINTS GTP-binding elongation factor signature 166 176 IPR000795 GO:0003924|GO:0005525
Trre15g03183 785 PRINTS GTP-binding elongation factor signature 100 113 IPR000795 GO:0003924|GO:0005525
Trre15g03183 785 PRINTS GTP-binding elongation factor signature 218 227 IPR000795 GO:0003924|GO:0005525
Trre15g03183 785 FunFam Elongation factor G 380 495 - -
Trre15g03183 785 SUPERFAMILY EF-G C-terminal domain-like 492 569 IPR035647 -
Trre15g03183 785 SUPERFAMILY Ribosomal protein S5 domain 2-like 567 687 IPR020568 -
Trre15g03183 785 CDD EFG_III 493 568 IPR009022 -
Trre15g03183 785 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 139 154 IPR031157 -
Trre15g03183 785 Pfam Elongation factor Tu domain 2 412 479 IPR004161 GO:0005525
Trre15g03183 785 Pfam Elongation Factor G, domain III 492 565 IPR041095 -
Trre15g03183 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 369 IPR027417 -
Trre15g03183 785 FunFam Elongation factor G 692 763 - -
Trre15g03183 785 NCBIfam small GTP-binding protein domain 98 268 IPR005225 GO:0005525
Trre15g03183 785 FunFam Elongation factor G 496 572 - -
Trre15g03183 785 FunFam Elongation factor G 89 380 - -
Trre15g03183 785 CDD EF-G 100 370 - -
Trre15g03183 785 SUPERFAMILY Translation proteins 352 492 IPR009000 -
Trre15g03183 785 SMART EFG_IV_2 568 686 IPR005517 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03183 Trre-Chr15 29671365 29675061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03183 97 756 Eukaryotic Initiation Factors Gene Family AT1G56070 25.342 3.38e-41 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03183 K02355 - gmx:102663021 1338.17