Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03155 ATGGCAAAGGGTTGCTCCAGCAACAACTATGAAGAGGCTAGGAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTAGGGATTTCAAAGATTTCAAAAATTTTGACTAAAGTCACAAGTCCTGCAAAGAAGTCCCAGAATCGTCTTCCCAGACTAAAATTAAAGACTAATGATGAAGTGGAACCTAGGCGCTCTTCTCGTCCAAGAAACCAAGTTACGTCATACACCGAAGAGTTTAGCACAGACCTTCCAGATAGGAGATCATATCTGCGGAAGAGGTCAAGATCAAGTTCATCATCATGGGGAAGTTACATTGCAAGGCCTCTAGATGAAATCAAAGAAGCTACACAACAAGAAAGAAATCGTGCTCTCGATGCTGCAGAGGCAATCCAAATCACTTTGGAGTCTTCAAAGCCATCATTTATCAAGTCAATGGTCCGGTCTCATGTTTATAGTTGTTTTTGGTTGGGTCTTCCTAGTAGATTTTGTGAGGAACACCTTCCAAAAACGGTGTATAACATGACTTTAGAGGATGAAGATGGCTCAGAGTATGATGCTGTTTACATTGGTACTAGAAGTGGGCTAAGTGGTGGCTGGAGAGCATTTGCATTGGAACATAAATTGGATGATGGTGATGCACTTGTTTTTGAATTGGTTGAACCAGCAAGATTTAAGATTTATATTGTTAGAGCATTTCCAAATATAGATGAAGAGGAAGAAGAAGAAAATGACACTCTAGTGGAAGAAGAAAATATGAACACATCCAAAGCAACAAAAGTATCCAAGGCTACCTCTATTCGTGGATCAAAATCAAAGAAGGCTAAAAAGCAAAAACATGTCATTGAAACGAAGGAATCAGAGAGTTCTGAAGACAGCGTGCCAGAAATTAACATCAACAAAGAATTCAAACCACCGAGTAGGAAAACTAGATCTTCTCGGATAGAAGTGCAAAAGAAGCCTAAATCGCCTACTACTCCTGACTCTGAGTCAAGTGAGGAAGCAAAAATGCAAACACTGAAGAAAACTAATTATCCTCAGAAAAAAATGCAAAAGACATCTGAAGTATCTACTACTCCTGAGCCAAAAGAGGAAGCACAAATTGAAACTGTGAAACGAAAAACTAGATCTTCTCTGAAAAAAATGCAAGAGATATCTGAAGTACCTACTACTCCTGAGCCAAAAGGGGAAGCACAGATTGACATTGTTAAAACAAAGACTAGATCTTCTCAGAAACAAATGCAAAAGATATCTGAAGTATCTACTGCTCTTGAGTCAAAAGAGGAAGCACAAGTTGAAAGTGTGAAACCGAAGGTAGCTGCAAAGTTGTCAAACAAGACACAAAAGTCGAAAGAAGGTAATGATTGTGAAATTGATGAGTCGATCAATACTGAGCAGCTTCTTCCGAAAGATAATGTTGTTGAAACAGTCGATGCTAACATGAGTGAGAAGAAAGAACGTGTTCAAGTTAATGATCTTGAGGCAGTGAAAGATAAACCAGATGAAAAACCAAGCAAACGTGCCTCACAAGTACCTCGAAAAAAATCAGCTCCTAAGTTTTTCAGAAAGAGGACATAG 1581 0.3877 MAKGCSSNNYEEARKQRLEENKKRFEDLGISKISKILTKVTSPAKKSQNRLPRLKLKTNDEVEPRRSSRPRNQVTSYTEEFSTDLPDRRSYLRKRSRSSSSSWGSYIARPLDEIKEATQQERNRALDAAEAIQITLESSKPSFIKSMVRSHVYSCFWLGLPSRFCEEHLPKTVYNMTLEDEDGSEYDAVYIGTRSGLSGGWRAFALEHKLDDGDALVFELVEPARFKIYIVRAFPNIDEEEEEENDTLVEEENMNTSKATKVSKATSIRGSKSKKAKKQKHVIETKESESSEDSVPEININKEFKPPSRKTRSSRIEVQKKPKSPTTPDSESSEEAKMQTLKKTNYPQKKMQKTSEVSTTPEPKEEAQIETVKRKTRSSLKKMQEISEVPTTPEPKGEAQIDIVKTKTRSSQKQMQKISEVSTALESKEEAQVESVKPKVAAKLSNKTQKSKEGNDCEIDESINTEQLLPKDNVVETVDANMSEKKERVQVNDLEAVKDKPDEKPSKRASQVPRKKSAPKFFRKRT 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03155 526 MobiDBLite consensus disorder prediction 252 267 - -
Trre15g03155 526 MobiDBLite consensus disorder prediction 240 526 - -
Trre15g03155 526 MobiDBLite consensus disorder prediction 339 365 - -
Trre15g03155 526 Pfam B3 DNA binding domain 143 231 IPR003340 GO:0003677
Trre15g03155 526 CDD B3_DNA 141 232 IPR003340 GO:0003677
Trre15g03155 526 MobiDBLite consensus disorder prediction 478 510 - -
Trre15g03155 526 Gene3D - 117 234 IPR015300 -
Trre15g03155 526 MobiDBLite consensus disorder prediction 37 82 - -
Trre15g03155 526 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 60 234 IPR044837 -
Trre15g03155 526 Coils Coil 8 28 - -
Trre15g03155 526 MobiDBLite consensus disorder prediction 53 68 - -
Trre15g03155 526 MobiDBLite consensus disorder prediction 280 338 - -
Trre15g03155 526 SUPERFAMILY DNA-binding pseudobarrel domain 136 232 IPR015300 -
Trre15g03155 526 ProSiteProfiles B3 DNA-binding domain profile. 143 234 IPR003340 GO:0003677
Trre15g03155 526 SMART B3_2 143 234 IPR003340 GO:0003677
Trre15g03155 526 MobiDBLite consensus disorder prediction 366 382 - -
Trre15g03155 526 MobiDBLite consensus disorder prediction 511 526 - -
Trre15g03155 526 MobiDBLite consensus disorder prediction 404 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03155 Trre-Chr15 29245288 29252099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03155 10 267 B3 DNA Binding Superfamily AT5G58280 47.018 3.53e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g03155 B3 2.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03155 - - cam:101498339 561.607