Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03154 ATGGAGGCCAGTGGCGGTGTTAGCGGTGGTGTTACGGTGGTGGGATCGGATGCTCCATCGGAGTACCATGTAGCTCCGAGAAACGACAACCAAACTCCGACAACTGGATCGGCGGTTCAGATTACTGCGGTGGTTCAAGGAGGTGTTCCACCGCAACCTCCTCCGTACACGGCGTTGGTAACGGCGTCTCCGGCAGTTACACCGGTGCCAGAGAAGAAGAAGAGAGGACGGCCGAGAAAGTATCCACAAGACGGGTCAGCGACTACGGCGCTGTCTCCAAAGCCAATATCTTCGTCTGCTCCGTTGCCGCCGGTGATCGATTTCACGGCGGAGAAACGTGCAAAAGTGCGGCCAGTTAGCTCGGTGAGCAAAGCTAAATTTGAGTTGGAAAATATAGGTGAATGGGCCCCTTGCTCAGTTGGTTCTAATTTCACACCCCACATCATTACTGTTAATGCTGGAGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCAAATGGTGTCATAAAAAGTGTCACACTTCGTCAACCCGATGCTTCTGGGGGGACATTGACATATGAGGGATTATTTGAAATTCTGTCTTTATCTGGTTCTTTCACGCCAAATGAAAGTGGAGGGACACGAAGCAGATCAGGTGGCATGAGTGTTTCTTTAGCAAGTCCTGATGGACGTGTTGTTGGTGGAGGAGTAGCTGGTTTGTTGGTGGCTGCAAGTCCAGTGCAGGTAGTGGTTGGTAGTTTTATGGCAGGAAACCAACATGAGCAAAAGCCAAGAAATCAGAAACATGATATGATATCAACTGTGACTTCTGCTGCTGCTGTTGTTCCCCTCCCTACTCTTGATCCAATACCTATTCTATCATCAGTATCTTCCTTTCGCGGAGATAATTGGTCTGCTGTGCAAGTACCAGATGCAAAGGATAAGCCTGCTGCTGACATTAATGTGTCACTTCCTGTAGGCTAG 999 0.4885 MEASGGVSGGVTVVGSDAPSEYHVAPRNDNQTPTTGSAVQITAVVQGGVPPQPPPYTALVTASPAVTPVPEKKKRGRPRKYPQDGSATTALSPKPISSSAPLPPVIDFTAEKRAKVRPVSSVSKAKFELENIGEWAPCSVGSNFTPHIITVNAGEDVTMKVISFSQQGPRAICILSANGVIKSVTLRQPDASGGTLTYEGLFEILSLSGSFTPNESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFMAGNQHEQKPRNQKHDMISTVTSAAAVVPLPTLDPIPILSSVSSFRGDNWSAVQVPDAKDKPAADINVSLPVG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03154 332 ProSiteProfiles PPC domain profile profile. 141 280 IPR005175 -
Trre15g03154 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 263 - -
Trre15g03154 332 MobiDBLite consensus disorder prediction 1 103 - -
Trre15g03154 332 CDD DUF296 145 236 IPR005175 -
Trre15g03154 332 FunFam AT-hook motif nuclear-localized protein 1-like 146 277 - -
Trre15g03154 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 279 IPR039605 GO:0003680
Trre15g03154 332 MobiDBLite consensus disorder prediction 25 42 - -
Trre15g03154 332 Gene3D - 146 278 - -
Trre15g03154 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 259 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03154 Trre-Chr15 29235687 29240003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03154 1 329 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.746 5.45e-120 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03154 - - gmx:100801730 480.33