Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03151 ATGGCTGCAGCCTCTAATCAATCCTCATCCACTTCAGAAAATATTTCATACAAAGTTTCTGAAGAAGAGAACGGCGTCAACAAAAACGATGTGACAATGAAGGCAAAGGAAGTTATAATATCCGAACCTTCAAAAAGCGATACCAATTTGCTTTTTGATTTCGTCAAGCTCTCTAATGATGATTTGATTCCTATGTCAAATGTGAAGGAATATGATTTTTTCACCCCCTCGAAAGACTTGGGGGCGAGTTCATCTTTATTACCTTGGGCAAATAATAAGTCCAATAATGAAGAGAACACAAAAGATAAATCTTTTGATTCGAGTAGTACTTTCTCTTGCAACTTTTGCAAGAGGCGGTTTTCTTCTTCACAAGCTTTGGGAGGGCATCAAAATGCTCATAAGCGTGAACGCGCAGTTGCAAAGCATCGCCAAGAGATTCAAAATGGTTTTGGAACCCCTATTTTTCCTTTTCCTTATCCTTACTACACAAGTTATCCAAGTCCTTCTTCATTTGGATCTTATAATAAAGCACTTGGAATTAGGATGGACTCCATGATTCACAAGCCAAGCTATTCTTGGATTCCGCCTCCTCATTATAAGTTCGGTTCGACTCCTAAGTGGACACTGATGCAAGAGATGAGACACTTTTCTTCATTTGATATATTGAAGATTGAGAGTCTTAATGCAAATAAAGAAAACAGTGCAACTCCAATTTCGACGAATAATAAGATGAAATTAGATGTTGGAGAGTCTTCGATAAATGTTGATACGAAGTCAAAGTCAAACGTAGACAAATCAACTGTAGTTGTCAGGGGTAGTAATCATGATACCGATAAGGAAGAAGAAGCTTCCGATTCTGAATCTACAAAGCTTGATTTGTCGCTTAAGCTTTAA 894 0.377 MAAASNQSSSTSENISYKVSEEENGVNKNDVTMKAKEVIISEPSKSDTNLLFDFVKLSNDDLIPMSNVKEYDFFTPSKDLGASSSLLPWANNKSNNEENTKDKSFDSSSTFSCNFCKRRFSSSQALGGHQNAHKRERAVAKHRQEIQNGFGTPIFPFPYPYYTSYPSPSSFGSYNKALGIRMDSMIHKPSYSWIPPPHYKFGSTPKWTLMQEMRHFSSFDILKIESLNANKENSATPISTNNKMKLDVGESSINVDTKSKSNVDKSTVVVRGSNHDTDKEEEASDSESTKLDLSLKL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03151 297 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 297 IPR044246 GO:0009788
Trre15g03151 297 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Trre15g03151 297 SUPERFAMILY beta-beta-alpha zinc fingers 109 138 IPR036236 -
Trre15g03151 297 MobiDBLite consensus disorder prediction 256 297 - -
Trre15g03151 297 MobiDBLite consensus disorder prediction 1 22 - -
Trre15g03151 297 Pfam C2H2-type zinc finger 111 135 - -
Trre15g03151 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Trre15g03151 297 MobiDBLite consensus disorder prediction 256 270 - -
Trre15g03151 297 MobiDBLite consensus disorder prediction 271 297 - -
Trre15g03151 297 MobiDBLite consensus disorder prediction 1 25 - -
Trre15g03151 297 Gene3D Classic Zinc Finger 91 150 - -
Trre15g03151 297 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03151 Trre-Chr15 29210329 29211222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03151 111 297 C2H2 Transcription Factor Family AT5G10970 35.385 1.36e-19 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre15g03151 zf-C2H2_6 2.6e-05 CL0361