Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03148 ATGCAATCTATTAGAAAATCATTCAAATTCAAAAAAACTTCCAGTAGGTTTACCTCTACCGGAGACGAAGATTCCGACGACCAGGAACAACAACTCCCTATCCTTCACGACCAAGAACACCACCGTCAACCTTCTCCCATGGCCGGTGACGTCGTCGTGAAGATTGACGACGGCGGTGAACCTTCTCGAGAGAATAAGATTTGGAGAGAGTCCAGCTATGATTTCTGGAATGATACCGGCGACAATGTCCGTGATGATAGTTTTGATTTCCGGAATAAAACTCGTCAGGAGGATCCACCGTCTCAGCTAATTGGAAAGTTTTTGCATAAACAGAAAGCCTCTGGTGAGATGTCGTTGGATATGGATTTGGAGATGGAGGAGCTTCAGAATGAAGGTGATAGCGATGGAAAGTTAACGCCGGTGGAGGAATCTCCTACAATGATTCAACGTGAGCTTATTAAGGTTTCGTTTGAGGAACCTTCTTCTTCGAATGTAATTGAATCTGTTAATGATCCTGTTAGGAGAAGACACAGCAAGGATTCACCTTCCATGGCTGAGTTTGCTAGACCTCCATTTCCTCCAAATCATGACCGTCGTCGTTCTCCGTCACCGGCCCCGGCCGGAACCGATTCTGAGGTCATTAGGTGTACCTCTAATGGTTCCTTTCATCCTTCTTTTGAAAAGAACCTTTCCATGCAGAGAAAATCAACGTTATTGAAAACCAAAACTAAGTCTAGATTAATGGACCCGCCAGATGAACCTCTGGTGGATAGAAGATCGGGTCGGGTTGCTAAATCGGGTCAGCTTTTGTCCGGGTTTATTGGGAAGAAAGGTGATGAGGAGGAAGATGATCCTTTTATGGAAGAGGATTTTCCAGATGAGTATAAGAAAACACAATTTAGTCTTTGGATTCTTCTTGAATGGTTGAGTTTGATTTTGATTATTGGGGCATTAGTAACAACTTTGAGTGTTCCTTTTTTGAGAGAGAAGAATTTGTGGCAACTCTTGTTATGGAAATGGGAGGTAATGATTCTTGTTCTAATATGCGGTAGATTGGTTTCTGATTGGTTTATTAGAATCGCCGTGTTTTGCATTGAAAGAAATTTTCTATTGAGAAAAAGGGTACTTTATTTTGTGTATGGTGTGAAGAAAGCTGTGCAAAATTGTGTTTGGTTGGGACTTGTTTTAATTGCATGGCATTTTCTCTTTGATGAGAGAGTTCAAAGAGAGACAAAAAGTGATTTTCTTCAATATGTCACCAAGGTTTTGGTTTGTTTCTTGGTGGGTACTTTGGTGTGGTTGTTGAAAACTTTAATGGTTAAGGTTTTAGCTTCTTCTTTTCATGTCAGTACATATTTTGATAGAATTCAAGAGTCACTGTTTAATCAATTCGTAATCGAAACACTTTCGGGGCCACCTTTGGTGGAAATTCGAAAGGCCGAAGAGGAAGAGGAAAGACTTGCTGAAGAGGTTCAAAAGTTGCAGAATGCTGGGGTTACCATACCTGCTGATCTTAGAGATTCTGCATTTCCTACCAAGAGTGGAAGGTCAAAGAGTGGAATGCTTCCCAAAAGCCCTGTTGTTAAAAGTGCCAGGTTTTCAAGGCCACTATCGAAGAAATCTGATGATGGAATTGGGAATGGTGGTGGGATAACTATTGATCACTTACATAAGCTGAATCCAAATAATGTGTCTGCTTGGAATATGAAAAGGTTGATGAATATGGTTCGGCACGGGGCACTTACTACATTAGATGAACAAATACTTGATTCCACTGCTGATGATGAGCATGCCACACAAATCAGAAGTGAAAATGAGGCTAAAGCAGCTGCTAAGAAAATCTTTCAGAATGTTGCTAGGCGAGGCTGCAGGTTTATATACCCTGAGGATTTGATGCGTTTTATGCGAGAAGATGAAGCTATAAAAACCATAAATCTCTTTGAAGGAGCGTTAGATACTGGGAGAATCAGTAAATCCGCCTTGAAAAATTGGGTGGTGAATGCCTTCAGGGAGAGGAGAGCACTTGCTTTGACATTGAATGACACCAAAACAGCAGTGAACAAACTTCATCGAATGCTCAATTTTTTAGTTGCCATTATCATACTGGTTATTTGGCTCTTGATATTGGAAATTGCCACCACCAAATTTCTTCTTTTTGTGAGCTCACAACTTGTCTTGGTTGCATTTATATTTGGAAACACCTGCAAAACTGTATTTGAAGCAATCATATTCTTATTTGTCATGCACCCGTTCGATGTGGGAGATAGATGTGAAATTGATGCAACCCAGATGGTTGTAGAAGAAATGAACATATTGACTACCGTATTTCTTAGATTCGATAATCAAAAGATAACGATTCCTAACGCTGTTCTTGCTACTAAGGCCATACATAATTTCTACCGTAGTCCTGACATGGGAGATTCTGTTGAATTCCTTATCCATGTAGCTACCCCAGCTGAAAAGATTTCACTCATAAAACTCAGAATAAATAGTTTCGTTGATAACAAGAAGGAGCATTGGTATCCTTCACCTTTTATAGTCTTGAAGGATCACGAACAATTGGATATGGTGAGAATGGCGATCTGGCCAACTCACAGAATGAACTTCCAAGACATGGGAGAAAGATTTATCAGGAGATCTCTTCTTGTTGAAGAGTTGATGAAGATTTTCAAAGATCTTGACATTCAATACCGTCTCATGCCTCTCGACATTAACGTTAGAGCTGTGCCTACCACTTCTGAACGTCTTCCACCTAGTTGGTCAGCATTCACAAATTGA 2778 0.405 MQSIRKSFKFKKTSSRFTSTGDEDSDDQEQQLPILHDQEHHRQPSPMAGDVVVKIDDGGEPSRENKIWRESSYDFWNDTGDNVRDDSFDFRNKTRQEDPPSQLIGKFLHKQKASGEMSLDMDLEMEELQNEGDSDGKLTPVEESPTMIQRELIKVSFEEPSSSNVIESVNDPVRRRHSKDSPSMAEFARPPFPPNHDRRRSPSPAPAGTDSEVIRCTSNGSFHPSFEKNLSMQRKSTLLKTKTKSRLMDPPDEPLVDRRSGRVAKSGQLLSGFIGKKGDEEEDDPFMEEDFPDEYKKTQFSLWILLEWLSLILIIGALVTTLSVPFLREKNLWQLLLWKWEVMILVLICGRLVSDWFIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHFLFDERVQRETKSDFLQYVTKVLVCFLVGTLVWLLKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIRKAEEEEERLAEEVQKLQNAGVTIPADLRDSAFPTKSGRSKSGMLPKSPVVKSARFSRPLSKKSDDGIGNGGGITIDHLHKLNPNNVSAWNMKRLMNMVRHGALTTLDEQILDSTADDEHATQIRSENEAKAAAKKIFQNVARRGCRFIYPEDLMRFMREDEAIKTINLFEGALDTGRISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDATQMVVEEMNILTTVFLRFDNQKITIPNAVLATKAIHNFYRSPDMGDSVEFLIHVATPAEKISLIKLRINSFVDNKKEHWYPSPFIVLKDHEQLDMVRMAIWPTHRMNFQDMGERFIRRSLLVEELMKIFKDLDIQYRLMPLDINVRAVPTTSERLPPSWSAFTN 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03148 925 MobiDBLite consensus disorder prediction 16 44 - -
Trre15g03148 925 FunFam Predicted mechanosensitive ion channel 750 799 - -
Trre15g03148 925 SUPERFAMILY Sm-like ribonucleoproteins 740 799 IPR010920 -
Trre15g03148 925 Pfam Mechanosensitive ion channel 692 895 IPR006685 GO:0016020|GO:0055085
Trre15g03148 925 Gene3D - 750 799 IPR023408 -
Trre15g03148 925 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 26 920 IPR016688 -
Trre15g03148 925 MobiDBLite consensus disorder prediction 128 219 - -
Trre15g03148 925 MobiDBLite consensus disorder prediction 56 71 - -
Trre15g03148 925 Coils Coil 474 500 - -
Trre15g03148 925 MobiDBLite consensus disorder prediction 1 108 - -
Trre15g03148 925 PIRSF Memb_At2g17000 24 923 IPR016688 -
Trre15g03148 925 MobiDBLite consensus disorder prediction 79 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03148 Trre-Chr15 29194047 29198740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03148 50 922 Mechanosensitive Ion Channel Family AT1G78610 58.388 0.0 965
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03148 K22048 - gmx:100789882 1360.13