Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03113 ATGGTGAGAGGAAAAACTCAAATGAAGAGAATTGAAAATGAGTCAAGTAGACAAGTAACTTTCTCAAAGAGAAGAAATGGGTTACTTAAAAAGGCTTTTGAACTCTCAGTTCTTTGTGATGCTGAAGTAGCACTCATTGTCTTCTCTACCACAGGGAAACTCTATGAGTTTTCAAGTACTTCAAGTATAAACAAAACAGTGGAACGCTATCAAGGGAAAGTCAAAGACTTGGCTCTCGGCATCGTAGGAGTTCAAGAAAATACACAGCCCCTTAAGGAATGTGATATCAACACGACAAAGAAGTTGGAGCACCTAGAACTTTCCAAAAGGAAGCTATTGGGAGATGAATTGGATACATGTGCAATTGATGAATTGCAAAAGATTGAAAATCAACTTGAACGCAGCTTAAGCAAAATTAGGGCAAGAAAGGATCAACTATTCAAGGAACAAATTGAAAAGCTAAGAGAGAAGGAAAGATACTTACTTGAAGAAAATAGACACTTATGTGAACAGTATGGAATTGAACAAGATGGTTGTCTAAGTAAACAACAAGATATCGAACTTGTAACGGAGAGTGTGGAAGACGAGGAGGAGGTGGAGACGGAGTTGTTCATAGGGCGACCTGAGAAACGAATGCATTGA 642 0.3847 MVRGKTQMKRIENESSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSTSSINKTVERYQGKVKDLALGIVGVQENTQPLKECDINTTKKLEHLELSKRKLLGDELDTCAIDELQKIENQLERSLSKIRARKDQLFKEQIEKLREKERYLLEENRHLCEQYGIEQDGCLSKQQDIELVTESVEDEEEVETELFIGRPEKRMH 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03113 213 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Trre15g03113 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre15g03113 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 159 - -
Trre15g03113 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre15g03113 213 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Trre15g03113 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre15g03113 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre15g03113 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre15g03113 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre15g03113 213 Coils Coil 122 149 - -
Trre15g03113 213 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Trre15g03113 213 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre15g03113 213 Pfam K-box region 97 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre15g03113 213 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre15g03113 213 FunFam Agamous-like MADS-box protein AGL13 13 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03113 Trre-Chr15 28342633 28350246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03113 1 211 MADS-box Gene Family AT4G22950 57.547 2.59e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre15g03113 K-box 3.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03113 - - gmx:100805260 275.789