Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03100 ATGGTGTTTAATGAGAATGAGAATGATTCGTCTAAAAATAATTTTGATGATATTGCTGATATATTTCCCCTCAAAGAGAGTGTTTCTATTAAAGTCAGGGTACTTCGAATGTGGAAGGTTCCTGCTTTCCTGAATCCATCAATTCCAAGTTCCATTGAAATGGTTTTAATTGATCAGAAGGGTGGGAAAATTCATGCCTCAATTAGGAAGCAATTGATCCATGTATTTGAGGCAAAGATTGAAGAGGGAATGGTTTATGAAATGTCTCATTTCTCTATATTCCCACAACTTGGTTCCTATCGAACAACTCTTCATCCACACAAACTTTTGTTCCAGCTCAAGACCACTGTTAAATTGTCTGATGATTCATCTGATATTAACAAATATGGTTTTAATTTCACTGAAATTGCTGAAATATGTGCTAATTCTCATGGTCATGAGTTTTTAGTTGAAGTTATTGGATATATGAGTGGTATGTCTGCTGAAAAGGAGTACATTAGAGATGGGAAGATAACCAAAATGGTTATTTTTGAGTTGACTGATCATAGTGGTAAGTGTGATGTTGCTTTGTTTGGCGATTATTTTGCTAAAATCAAAACTTTTAGAGATAAAGTTTCCCTTCAAAATGTCATTAACACAACTAGGCTTTTTATAAACCCTGATATTCCTGATGTTGAGTCCTTCAAAAATAGTGTTGCTGTTCATGGTGAGAGAACATCTTTTCTGTGTGAGTTAGATAGTGACCATGTTGAGGAATTTCGTAACCTCATCAAGTCTTCTTGTGATGGTCTACCAATTTTAGTGCTGCAGTTTGTTGAGCTTACAATGTCTCAGGGTTATAGATTGGTCAAGGGAATTAAGAATATTACTAGAATGTTCATGAATCCCGCCACAATTGTTGATCCGATCAATTTTAGAAAGCGTTTGGTTGATTATTTGACCCGAGGAATCAAGTATACCGGTCTTCTACGTTCCACACGTCGTATGCCTATGTCTTACACGCTTGATTTTATTAAGGACTACCCTGTTGTCACAATAGACAAGCTTAATATGGATCCAAAGCTGGGTCTGTTTGTTGTCAATGCTAGGATCGCTGATATCGTCAGCTTTGATCCTTGGTGGTATCCTGTCTGCAAGTGTTCCAAGATATTTGACAAGTACATTGGCACTTTTCATTGTGTTGAGTGTGGCTTGGGGAAATTTCTAGCTGGTCCAAAGGTCAAGCTAACCTTCAGATTGGAAGATGAAACTGGAACTGCTCTTTTTAAGGCATTTGATCATGTTGCGGTCAACATTGCTGAAGTTAATATGTCTTCTGATGGAATCAGCGGTGAATGGTTTCAAAGGGTCTTTAGTGTTGTCTTGGGTAAAAGTTTGATGTTCATTGTCAAGAAAACAGTGCATGAACCAATGTTTATTTACAGTTCTTTTGATCTGGTTCGTGTCACTGATCATCCTGCTGTCTTTAGATATTATGATGGATGTGGTTTCTCTGTTCTTCCTTCAAAGGATTTATCTTCCATGGTTTGTTCTGTTGCCAAAAACAAGCGCCCTGTTATTCTTCCTCGGTGCACAACTACCACAGCTGATTTGATCAAGGAGTATTTAACTGCTGCAAATAATCATTCGTCGGATCCGAACCTTTTTACGTGTTGTGTTTTGAAGAGAGCAAGGGAATGA 1680 0.3756 MVFNENENDSSKNNFDDIADIFPLKESVSIKVRVLRMWKVPAFLNPSIPSSIEMVLIDQKGGKIHASIRKQLIHVFEAKIEEGMVYEMSHFSIFPQLGSYRTTLHPHKLLFQLKTTVKLSDDSSDINKYGFNFTEIAEICANSHGHEFLVEVIGYMSGMSAEKEYIRDGKITKMVIFELTDHSGKCDVALFGDYFAKIKTFRDKVSLQNVINTTRLFINPDIPDVESFKNSVAVHGERTSFLCELDSDHVEEFRNLIKSSCDGLPILVLQFVELTMSQGYRLVKGIKNITRMFMNPATIVDPINFRKRLVDYLTRGIKYTGLLRSTRRMPMSYTLDFIKDYPVVTIDKLNMDPKLGLFVVNARIADIVSFDPWWYPVCKCSKIFDKYIGTFHCVECGLGKFLAGPKVKLTFRLEDETGTALFKAFDHVAVNIAEVNMSSDGISGEWFQRVFSVVLGKSLMFIVKKTVHEPMFIYSSFDLVRVTDHPAVFRYYDGCGFSVLPSKDLSSMVCSVAKNKRPVILPRCTTTTADLIKEYLTAANNHSSDPNLFTCCVLKRARE 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03100 559 Gene3D - 331 478 IPR012340 -
Trre15g03100 559 SUPERFAMILY Nucleic acid-binding proteins 349 468 IPR012340 -
Trre15g03100 559 CDD RPA1_DBD_A_like 29 117 - -
Trre15g03100 559 Gene3D - 124 244 IPR012340 -
Trre15g03100 559 Pfam Domain of unknown function DUF223 53 143 IPR003871 -
Trre15g03100 559 SUPERFAMILY Nucleic acid-binding proteins 13 127 IPR012340 -
Trre15g03100 559 SUPERFAMILY Nucleic acid-binding proteins 131 236 IPR012340 -
Trre15g03100 559 Gene3D - 13 119 IPR012340 -
Trre15g03100 559 CDD RPA1_DBD_B_like 152 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03100 Trre-Chr15 28206166 28209045 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03100 18 240 Core DNA Replication Machinery Family AT2G06510 25.200 6.21e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03100 - - tpra:123914763 371.703