Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03099 ATGGTGTTTAATGAGAATGAGAATGATTCGTCTAAAAATAATTTTGATGATATTGCTGATATATTTCCCCTCAAAGAGAGTGTTTCTATTAAAGTCAGGGTACTTCGAATGTGGAAGGTTCCTGCTTTCCTGAATCCATCAATTCCAAGTTCCATTGAAATGGTTTTAATTGATCAGAAGGGTGGGAAAATTCATGCCTCAATTAGGAAGCAATTGATCCATGTATTTGAGGCAAAGATTGAAGAGGGAATGGTTTATGAAATGTCTCATTTCTCTATATTCCCACAACTTGGTTCCTATCGAACAACTCTTCATCCACACAAACTTTTGTTCCAGCTCAAGACCACTGTTAAATTGTCTGATGATTCATCTGATATTAACAAATATGGTTTTAATTTCACTGAAATTGCTGAAATATGTGCTAATTCTCATGGTCATGAGTTTTTAGTTGAAGTTATTGGATATATGAGTGGTATGTCTGCTGAAAAGGAGTACATTAGAGATGGGAAGATAACCAAAATGGTTATTTTTGAGTTGACTGATCATAGTGGTAAGTGTGATTTTGCTAAAATCAAAACTTTTAGAGATAAAGTTTCCCTTCAAAATGTCATTAACACAACTAGGCTTTTTATAAACCCTGATATTCCTGATGTTGAGTCCTTCAAAAATAGTGTTGCTGTTCATGGTGAGAGAACATCTTTTCTGTGTGAGTTAGATAGTGACCATGTTGAGGAATTTCGTAACCTCATCAAGTCTTCTTGTGATGGTCTACCAATTTTAGTGCTGCAGTTTGTTGAGCTTACAATGTCTCAGGGTTATAGATTGGTCAAGGGAATTAAGAATATTACTAGAATGTTCATGAATCCCGCCACAATTGTTGATCCGATCAATTTTAGAAAGCGTTTGGTTGATTATTTGACCCGAGGAATCAAGTATACCGGTCTTCTACGTTCCACACGTCGTATGCCTATGTCTTACACGCTTGATTTTATTAAGGACTACCCTGTTGTCACAATAGACAAGCTTAATATGGATCCAAAGCTGGGTCTGTTTGTTGTCAATGCTAGGATCGCTGATATCGTCAGCTTTGATCCTTGGTGGTATCCTGTCTGCAAGTGTTCCAAGATATTTGACAAGTACATTGGCACTTTTCATTGTGTTGAGTGTGGCTTGGGGAAATTTCTAGCTGGTCCAAAGGTCAAGCTAACCTTCAGATTGGAAGATGAAACTGGAACTGCTCTTTTTAAGGCATTTGATCATGTTGCGGTCAACATTGCTGAAGTTAATATGTCTTCTGATGGAATCAGCGGTGAATGGTTTCAAAGGGTCTTTAGTGTTGTCTTGGGTAAAAGTTTGATGTTCATTGTCAAGAAAACAGTGCATGAACCAATGTTTATTTACAGTTCTTTTGATCTGGTTCGTGTCACTGATCATCCTGCTGTCTTTAGATATTATGATGGATGTGGTTTCTCTGTTCTTCCTTCAAAGGATTTATCTTCCATGGTTTGTTCTGTTGCCAAAAACAAGCGCCCTGTTATTCTTCCTCGGTGCACAACTACCACAGCTGATTTGATCAAGGAGTATTTAACTGCTGCAAATAATCATTCGTCGGATCCGAACCTTTTTACGTGTTGTGTTTTGAAGAGAGCAAGGGAATGA 1659 0.3755 MVFNENENDSSKNNFDDIADIFPLKESVSIKVRVLRMWKVPAFLNPSIPSSIEMVLIDQKGGKIHASIRKQLIHVFEAKIEEGMVYEMSHFSIFPQLGSYRTTLHPHKLLFQLKTTVKLSDDSSDINKYGFNFTEIAEICANSHGHEFLVEVIGYMSGMSAEKEYIRDGKITKMVIFELTDHSGKCDFAKIKTFRDKVSLQNVINTTRLFINPDIPDVESFKNSVAVHGERTSFLCELDSDHVEEFRNLIKSSCDGLPILVLQFVELTMSQGYRLVKGIKNITRMFMNPATIVDPINFRKRLVDYLTRGIKYTGLLRSTRRMPMSYTLDFIKDYPVVTIDKLNMDPKLGLFVVNARIADIVSFDPWWYPVCKCSKIFDKYIGTFHCVECGLGKFLAGPKVKLTFRLEDETGTALFKAFDHVAVNIAEVNMSSDGISGEWFQRVFSVVLGKSLMFIVKKTVHEPMFIYSSFDLVRVTDHPAVFRYYDGCGFSVLPSKDLSSMVCSVAKNKRPVILPRCTTTTADLIKEYLTAANNHSSDPNLFTCCVLKRARE 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03099 552 CDD RPA1_DBD_A_like 29 117 - -
Trre15g03099 552 Pfam Domain of unknown function DUF223 53 143 IPR003871 -
Trre15g03099 552 Gene3D - 185 236 IPR012340 -
Trre15g03099 552 SUPERFAMILY Nucleic acid-binding proteins 131 229 IPR012340 -
Trre15g03099 552 CDD RPA1_DBD_B_like 152 225 - -
Trre15g03099 552 Gene3D - 13 119 IPR012340 -
Trre15g03099 552 SUPERFAMILY Nucleic acid-binding proteins 13 127 IPR012340 -
Trre15g03099 552 Gene3D - 324 471 IPR012340 -
Trre15g03099 552 SUPERFAMILY Nucleic acid-binding proteins 342 461 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03099 Trre-Chr15 28206166 28209045 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03099 18 233 Core DNA Replication Machinery Family AT2G06510 24.400 1.12e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03099 - - tpra:123914763 377.096