Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03098 ATGGATCCATCTTTGAGTGGGAGATCCATGTTTCTAGATCTGTGGCAAGGGGTGGAAACGTTTTGGGAATATACAAGAAATTGTTTGAAGAAGGCTCATACGACTATATATCTGGTTGATTCATCTAGTGGAAGGGTATTTAGATCGCCAATTTTTACTTCATCAAAGCATGATGAAGATAAATTTATTTATTCTGGCTGGATTAGATTCGTCAAAGCTAATTCACTTCGTTTTAAAGATAAAGTTGTGTTGAATGCTAAGCATGGAAATAATGTACTTGATGTCCACATTATTCGTGGATCACAATCTTCTTGA 315 0.3556 MDPSLSGRSMFLDLWQGVETFWEYTRNCLKKAHTTIYLVDSSSGRVFRSPIFTSSKHDEDKFIYSGWIRFVKANSLRFKDKVVLNAKHGNNVLDVHIIRGSQSS 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03098 104 Gene3D - 13 102 IPR015300 -
Trre15g03098 104 SUPERFAMILY DNA-binding pseudobarrel domain 23 100 IPR015300 -
Trre15g03098 104 Pfam B3 DNA binding domain 29 100 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03098 Trre-Chr15 28204768 28205429 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g03098 B3 4.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03098 - K05931 tpra:123882118 94.3597