Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03097 ATGGTGTTTAATGAGAATGAGAATGATTCGTCTAAAAATAATTTTGATGATATTGCTGATATATTTCCCCTCAAAGAGAGTGTTTCTATTAAAGTCAGGGTACTTCGAATGTGGAAGGTTCCTGCTTTCCTGAATCCATCAATTCCAAGTTCCATTGAAATGGTTTTAATTGATCAGAAGGGTGGGAAAATTCATGCCTCAATTAGGAAGCAATTGATCCATGTATTTGAGGCAAAGATTGAAGAGGGAATGGTTTATGAAATGTCTCATTTCTCTATATTCCCACAACTTGGTTCCTATCGAACAACTCTTCATCCACACAAACTTTTGTTCCAGCTCAAGACCACTGTTAAATTGTCTGATGATTCATCTGATATTAACAAATATGGTTTTAATTTCACTGAAATTGCTGAAATATGTGCTAATTCTCATGATCATGAGTTTTTAGTTGAAGTTATTGGATATATGAGTGGTATGTCTGCTGAAAAGGAGTACATTAGAGATGGGAAGATAACCAAAATGGTTATTTTTGAGTTGACTGATCATAGTGGTAAGTGTGAGGTTGCTTTGTTTGGCGATTATGTTCATGATCTGAAAAAGAAGATGTTGAAATCATCTGGTTGTCTGCCTATAGTTGTTGTTCAGTTTGCTAAAATCAAAACTTTTAGAGATAAAGTTTCCCTTCAAAATGTCATTAACACAACTAGGCTTTTTATAAACCCTAATATTCCTGATGTTGAGTCCTTCAAAAATAGTGTTGCTGTTCATGGTGAGAGAACATCTTTTCTGTGTGAGTTAGATGGTGACCATGTTGAGGAATTTCGTAACCTCATCAAGTCTTCTTGTGATGGTCTACCAATTTTAGTGCTGCAGTTTGTTGAGCTTACAATGTCTCAGGGTTATAGGTTGGTCAAGGGAATTAAGAATATTACTAGAATGTTCATGAATCCCGCCACAATTGTTGATCCGATCAATTTTAGAAAGCGTTTGGTTGATTATTTGACCCGAGGAATCAAGTATACCGGTCTTCTACGTTCCACACGTCGTATGCCTATGTCTTACACGCTTGATTTTATTAAGGACTACCCTGTTGTCACAATAGACAAGCTTAATATGGATCCAAAGCTGGGTCTGTTTGTTGTCAATGCTAGGATCGCTGATATCGTCAGCTTTGATCCTTGGTGGTATCCCGTCTGCAAGTGTTCCAAGATATTTGACAAGTACATTGGCACTTTTCATTGTGTTGAGTGTGGCTTGGGGAAATTTCTAGCTGGTCCAAAGGTCAAGCTAACCTTCAGATTGGAAGATGAAACTGGAACTGCTCTTTTTAAGGCATTTGATCATGTTGCGGTCAACATTGCTGAAGTTAATATGTCTTCTGATGGAATCAGCGGTGAATGGTTTCAAAGGGTCTTTAGTGCTGTCTTGGGTAAAAGTTTGATGTTCATTGTCAATAAAACAGTGCATGAACCAATGTTTATTTACAGTTCTTTTGATCTGGTTCGTGTCACTGATCATCCTGCTGTCTTTAGATATTATGATGGATGTGGTTTCTCTGTTCTTCCTTCCAAGGATTTATCTTCCATGGTTTGTTCTGTTGCCAAAAACAAGCGCCCTGTTATTCTTCCTCGGTGCACAACTACCACAGCTGATTTGATCAAGGAGTATTTAACTGCTGCAAATAATCATTCGTCGGATCCGAACCTTTTTACGCGTTGTGTTTTGAAGAGAGCAAGGGAATGA 1743 0.3775 MVFNENENDSSKNNFDDIADIFPLKESVSIKVRVLRMWKVPAFLNPSIPSSIEMVLIDQKGGKIHASIRKQLIHVFEAKIEEGMVYEMSHFSIFPQLGSYRTTLHPHKLLFQLKTTVKLSDDSSDINKYGFNFTEIAEICANSHDHEFLVEVIGYMSGMSAEKEYIRDGKITKMVIFELTDHSGKCEVALFGDYVHDLKKKMLKSSGCLPIVVVQFAKIKTFRDKVSLQNVINTTRLFINPNIPDVESFKNSVAVHGERTSFLCELDGDHVEEFRNLIKSSCDGLPILVLQFVELTMSQGYRLVKGIKNITRMFMNPATIVDPINFRKRLVDYLTRGIKYTGLLRSTRRMPMSYTLDFIKDYPVVTIDKLNMDPKLGLFVVNARIADIVSFDPWWYPVCKCSKIFDKYIGTFHCVECGLGKFLAGPKVKLTFRLEDETGTALFKAFDHVAVNIAEVNMSSDGISGEWFQRVFSAVLGKSLMFIVNKTVHEPMFIYSSFDLVRVTDHPAVFRYYDGCGFSVLPSKDLSSMVCSVAKNKRPVILPRCTTTTADLIKEYLTAANNHSSDPNLFTRCVLKRARE 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03097 580 CDD RPA1_DBD_A_like 29 117 - -
Trre15g03097 580 Gene3D - 352 497 IPR012340 -
Trre15g03097 580 Gene3D - 124 264 IPR012340 -
Trre15g03097 580 Pfam Domain of unknown function DUF223 53 149 IPR003871 -
Trre15g03097 580 SUPERFAMILY Nucleic acid-binding proteins 131 257 IPR012340 -
Trre15g03097 580 SUPERFAMILY Nucleic acid-binding proteins 370 488 IPR012340 -
Trre15g03097 580 SUPERFAMILY Nucleic acid-binding proteins 13 127 IPR012340 -
Trre15g03097 580 Gene3D - 13 119 IPR012340 -
Trre15g03097 580 PANTHER OS03G0429900 PROTEIN 18 253 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre15g03097 580 CDD RPA1_DBD_B_like 152 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03097 Trre-Chr15 28186039 28188910 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03097 21 251 Core DNA Replication Machinery Family AT4G19130 25.316 1.04e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03097 - - tpra:123885964 332.798