Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03096 ATGGATCCATCTTTGAGATCTCATCGCTTAAGAAAGGTTCCTATTACATACCAGTGGGAGATCCATGTTTCTAGATCTGTGGCAAGGGGTGGAAACGTTTTGAATTTTCCCAGGGAATATACAAGAAATTGTTTGAAGAAGGCTCATACGACTATATATCTGGTTGATTCATCTAGTGGAAGGGTATTTAGATCACCAATTTTTACTTCATCAAAGCATGATGAAGATAAATTTATTTATTCTGGCTGGATTAGATTCGTCAAAGCTAATTCACTTCGTTTTAAAGATAAAGTTGTGTTGAATGCTAAGCATGGAAATAATGTACTTGATGTCCACATTATTCGTGGATCACAATCTTCTTGA 363 0.3554 MDPSLRSHRLRKVPITYQWEIHVSRSVARGGNVLNFPREYTRNCLKKAHTTIYLVDSSSGRVFRSPIFTSSKHDEDKFIYSGWIRFVKANSLRFKDKVVLNAKHGNNVLDVHIIRGSQSS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03096 120 ProSiteProfiles B3 DNA-binding domain profile. 19 117 IPR003340 GO:0003677
Trre15g03096 120 SUPERFAMILY DNA-binding pseudobarrel domain 25 116 IPR015300 -
Trre15g03096 120 Pfam B3 DNA binding domain 32 116 IPR003340 GO:0003677
Trre15g03096 120 CDD B3_DNA 34 115 IPR003340 GO:0003677
Trre15g03096 120 Gene3D - 12 118 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03096 Trre-Chr15 28184601 28185302 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g03096 B3 7.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03096 - K05931 tpra:123882118 127.102