Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03094 ATGATGAAATCATCATCATCACTTGATGAGTCTAATTACCCTTCATACTCAAGTTCATCATCGGAAACAAGTTGCTACGAAGAAATCTTGTTAGCGTCGGAGCAACCAAAGAAGAAAGCGGGGAGAAGAAAATTCAAGGAGACAAGACATCCAGTATATAGAGGAATACGAAAGAGAAACAACAACAAATGGGTTTGTGAAGTTCGTGTTCCAAACGACAAATCCACGAGGATTTGGTTAGGAACATATCCAACACCTGAAATGGCTGCACGTGCACACGACGTTGCTGCTTTGGCACTTCGTGGAAAATCAGCTTGTCTTAACTTTGCTGATTCGGCTTGGCGGTTGCGGTTGCCGGCGTCCACTGATCCCAAGGAGATTAGGAAAATGGCTGCTGAAGCTGCTTTGGCATTTGCTGTTGAAGATGGTAACACTAACACTAACACACAACAACTTGTAATTAGTACTGATTGTGATGTAACTGATGATGTTAATAGCATTGGTGTTATGGAAGATGATGATAAAATTTTGCAGGAACTGTGTGTGGAAGTTCCAGAGCTGGAGCAGGACATGTTGCATGATTGGTTTCGGAGTATGGCGGATGAGCCTTTACGATCTCCGGCAAGTCCATTTATAAGATCATATGGAAGGGATCACTGGAATAATGTTGATGTTGATGTCGATGTCGAAGAAGTGTCCTTGTGGAGCTTTACCATATAA 720 0.425 MMKSSSSLDESNYPSYSSSSSETSCYEEILLASEQPKKKAGRRKFKETRHPVYRGIRKRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLRLPASTDPKEIRKMAAEAALAFAVEDGNTNTNTQQLVISTDCDVTDDVNSIGVMEDDDKILQELCVEVPELEQDMLHDWFRSMADEPLRSPASPFIRSYGRDHWNNVDVDVDVEEVSLWSFTI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03094 239 SMART rav1_2 52 116 IPR001471 GO:0003700|GO:0006355
Trre15g03094 239 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Trre15g03094 239 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Trre15g03094 239 MobiDBLite consensus disorder prediction 1 22 - -
Trre15g03094 239 SUPERFAMILY DNA-binding domain 52 112 IPR016177 GO:0003677
Trre15g03094 239 ProSiteProfiles AP2/ERF domain profile. 52 110 IPR001471 GO:0003700|GO:0006355
Trre15g03094 239 Pfam AP2 domain 51 102 IPR001471 GO:0003700|GO:0006355
Trre15g03094 239 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 236 IPR045277 GO:0003700
Trre15g03094 239 CDD AP2 53 112 IPR001471 GO:0003700|GO:0006355
Trre15g03094 239 Gene3D AP2/ERF domain 52 111 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03094 Trre-Chr15 28161439 28162158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03094 6 237 AP2-EREBP Transcription Factor Family AT5G51990 49.580 1.19e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g03094 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03094 - - pvu:PHAVU_003G212800g 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03094 15 28161439 28162158 Trre15g03094 15 28161439 28162158 ECH