Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03093 ATGTCTTCTTCATCTTCTTCTTCCAAAAGGCACCCAATATACCATGGCATTCGAAGCCGATCAGGAAAATGGGTGACTGAAATGCGTGAGCCTCGGAAGACAAACCGAATATGGTTAGGCACATTCTCCACACCTGAGATGGCAGCCGCGGCATATGATGTCGCGGCTTTGGCTCTCAAAGGCAGGGAAGCTGTTCTAAACTTTCCTGCCTATGTCGGCAAGTACCCGGTGCCAGCGTCCAATTCGCCGGATGACATCCGCGCTGCTGCCACTGCTGCAGCCGAATTAGTGAAGGCTGAAGCTATTAATGGTGCTGGCGTTGATGTTAGTCCTTTGTATGAAACTGAGTTTCTTGATGAAGAAGCTATATTCTCCATGCCAAGATTGATGCTAGAAATGGCTGAGGGAATGCTCCTTTCTCCTCCCAGAATGAATCCACCACCGTCTGAGTACTCGCCTGAATATTACACTTTGGGAGATAGTTTGTGGAACTATTAG 498 0.4839 MSSSSSSSKRHPIYHGIRSRSGKWVTEMREPRKTNRIWLGTFSTPEMAAAAYDVAALALKGREAVLNFPAYVGKYPVPASNSPDDIRAAATAAAELVKAEAINGAGVDVSPLYETEFLDEEAIFSMPRLMLEMAEGMLLSPPRMNPPPSEYSPEYYTLGDSLWNY 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03093 165 Pfam AP2 domain 16 61 IPR001471 GO:0003700|GO:0006355
Trre15g03093 165 CDD AP2 12 70 IPR001471 GO:0003700|GO:0006355
Trre15g03093 165 FunFam Ethylene-responsive transcription factor 2 12 70 - -
Trre15g03093 165 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Trre15g03093 165 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Trre15g03093 165 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Trre15g03093 165 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Trre15g03093 165 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 150 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03093 Trre-Chr15 28150676 28151173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03093 8 165 AP2-EREBP Transcription Factor Family AT5G52020 54.598 9.81e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g03093 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03093 - - vra:106768065 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03093 15 28150676 28151173 Trre15g03093 15 28150676 28151173 ECH
Trre15g03093 15 28150676 28151173 Trre9g00413 9 2996557 2997210 PCT