Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03082 ATGGGAAAAGCTTCGCGCTGGTTTCGCGGTCTTCTCGGTCTCAAAAAATCAGAACACAACACTTCTGATCATCACAAACCACCTAAAGAGAAACGTCGATGGAGTTTCGTCAAATCATACAGAGAAGACCAACCACATAACACCGCCGTTGAAACAGAACACGTCCAAAACAACAAACAAGCCATCGCCGTCGCTGCTGCCACCGCTGCAGCAGCGGAAGCCGCCGTAGCCGCTGCTCAAGCTGCTGCCGCCGTTGTCAGATTCAATTATAGCAGTAATGGAATCGTCAGGATACGCGAACAATGGGCTGCCGTTAAGATCCAATCCGCTTTTCGAGGAAGTTTGGCGAGAAAGGCGCTTCGAGCATTAAAAGGGTTGGTGAAGCTGCAGGCATTGGTGAGAGGTCACATTGAGCGGAAACGAACAGCAGAGTGGCTCAAAAAAATGCAATCACTTTTAAGGGCACAGGCACGATATAATGCAGCACGTACAATGCAAATCTCACATTCTCATGTAAAATCTTCTACGTTCCACCACCTTCACGGTCCACCAACACCAGAAAAATCTGAAGAAAGTCCTGTTAGATCTAGGAGCGTGAAATCTGAGCATTCACCGACACTCAAGAGAAACAGTTCCAAATCATGTCTCCCAATCAGCGGCAACTTATCAGAGAATCAGTTAGACGAACAATCATGGAATAGAGTAAGATCACTGATAAGAAACTATAGCAGGAGCGACGAAAAACACGATAGGATTGTTGAAATTGATTCAGGAAAACAACACATGACCACGAAACGTAGAAACCTCTTTCACTCCATCAGCGATACTGATCATTATTACTATAGTCAGAATTTGACCCCTAAAAAAGAATCAAAATCTTATCAATCCACTCAAAGTCAATCTTGTGAGGTTCAATCTTATTACAATCCACTCAAACTCAACGAAGGTGAAGAAAGCTCGTTTTGCACCGCAAACAATAGTCCTCAATTATTATCCGCCACTTCAAAAGACGATGGCTACAAAAGAAGCCCTTTTACTCCTACTAGAAGTGATGGCTCAAGAAACTACCTTAGAGGCTATTCTGATTATCCAAGTTACATGGCTTATACAGAATCATCCAAGGCAAAAGTTAGATCTTTGAGTGCACCAAAACAAAGGCCTCAATTTGAGAAATCTGGTTCTTCTAATAGGTATTCACTGAATGGACATGACATGGCTAGATTGGCTACAATGAGAACATCTGCATTGCAAACAAGCTTCACTAGTAAAGGCTATCCTGGTTCTGGTCGTTTGGATAAGCTTGGAATGCCTGTGGGGTATAGATGA 1326 0.4336 MGKASRWFRGLLGLKKSEHNTSDHHKPPKEKRRWSFVKSYREDQPHNTAVETEHVQNNKQAIAVAAATAAAAEAAVAAAQAAAAVVRFNYSSNGIVRIREQWAAVKIQSAFRGSLARKALRALKGLVKLQALVRGHIERKRTAEWLKKMQSLLRAQARYNAARTMQISHSHVKSSTFHHLHGPPTPEKSEESPVRSRSVKSEHSPTLKRNSSKSCLPISGNLSENQLDEQSWNRVRSLIRNYSRSDEKHDRIVEIDSGKQHMTTKRRNLFHSISDTDHYYYSQNLTPKKESKSYQSTQSQSCEVQSYYNPLKLNEGEESSFCTANNSPQLLSATSKDDGYKRSPFTPTRSDGSRNYLRGYSDYPSYMAYTESSKAKVRSLSAPKQRPQFEKSGSSNRYSLNGHDMARLATMRTSALQTSFTSKGYPGSGRLDKLGMPVGYR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03082 441 Gene3D - 98 151 - -
Trre15g03082 441 MobiDBLite consensus disorder prediction 183 207 - -
Trre15g03082 441 MobiDBLite consensus disorder prediction 170 219 - -
Trre15g03082 441 ProSiteProfiles IQ motif profile. 100 128 IPR000048 GO:0005515
Trre15g03082 441 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
Trre15g03082 441 PANTHER IQ-DOMAIN 5-RELATED 1 401 - -
Trre15g03082 441 SMART iq_5 122 143 IPR000048 GO:0005515
Trre15g03082 441 SMART iq_5 99 121 IPR000048 GO:0005515
Trre15g03082 441 MobiDBLite consensus disorder prediction 377 400 - -
Trre15g03082 441 MobiDBLite consensus disorder prediction 332 353 - -
Trre15g03082 441 Pfam IQ calmodulin-binding motif 127 141 IPR000048 GO:0005515
Trre15g03082 441 Pfam IQ calmodulin-binding motif 102 121 IPR000048 GO:0005515
Trre15g03082 441 Pfam Protein of unknown function (DUF4005) 327 408 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03082 Trre-Chr15 27961954 27965661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03082 101 441 IQD Protein Family AT4G23060 43.251 2.99e-63 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03082 - - gmx:100793587 503.056