Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03081 ATGGCATCATCATCCTCAAGCAGCAACAGCGCCAACTACGACATGCCGTGGGTTGAAAAGTACCGTCCTAGCAAGGTCATCGACATCGTCGGCAATGAAGACGCCGTCTCTCGTCTCCAAGTCATCGCTCGTGACGGCAACATGCCCAATCTCATTTTATCAGGTCCTCCTGGAACTGGAAAAACCACTAGTATACTCGCCCTTGCTCACGAACTTCTCGGTCCCAATTACAAAGAAGCTGTTGAAGAACTCAATGCATCAGATGATAGAGGAATAGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAAAAGAAAGTAACGCTTCGTCCGGGCCGACACAAAATTGTTATACTTGATGAAGCTGACAGCATGACATCTGGAGCACAACAAGCTTTGAGAAGGACAATGGAGATATATTCCAACACTACACGTTTTGCGCTTGCTTGCAATACATCTTCTAAGATTATTGAGCCAATTCAGAGTAGGTGTGCCATTGTCAGATTTTCGCGATTGTCTGATCAAGAGATACTTGGTCGCCTCATGGTTGTGGTTCAGGCTGAGAAGGTTCCCTATGTTCCTGAAGGACTTGAGGCCATCATTTTCACTGCTGATGGTGATATGAGGCAGGGATTAAACAACTTGCAAGCAACATTCAGTGGGTTCCAGTTTGTTAACCAAGCAAATGTTTTTAAGGTTTGTGACCAGCCGCATCCACTGCATGTGAAGAATATGGTGCGCAATGTGATTGAAGGTAATTTCGATGAGGCTTGTTCGGGGCTCAAGCAACTGTATGACTTGGGATATTCCCCCACAGATATCATCACCACACTGTTTCGTATCATAAAAAGTTCTGATATGGCGGAGTACTTGAAACTGGAATTCATGAAGGAAACTGGATTTGCCCATATGAGGATTTGTGATGGAGTTGGTTCTTATCTTCAAATGTGCGGTCTGTTGGCCAAGCTTTCTCTTGTTCGCGACACTGCTAAAGCTGCATGA 1002 0.4491 MASSSSSSNSANYDMPWVEKYRPSKVIDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVEELNASDDRGIDVVRNKIKMFAQKKVTLRPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQGLNNLQATFSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKSSDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSLVRDTAKAA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03081 333 CDD HLD_clamp_RFC 172 234 - -
Trre15g03081 333 Gene3D - 8 172 IPR027417 -
Trre15g03081 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 234 IPR027417 -
Trre15g03081 333 Pfam Replication factor C C-terminal domain 237 322 IPR013748 -
Trre15g03081 333 SUPERFAMILY post-AAA+ oligomerization domain-like 236 327 IPR008921 GO:0003677|GO:0006260
Trre15g03081 333 Gene3D - 237 328 - -
Trre15g03081 333 SMART AAA_5 47 173 IPR003593 GO:0016887
Trre15g03081 333 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 15 317 - -
Trre15g03081 333 CDD AAA 30 167 - -
Trre15g03081 333 FunFam replication factor C subunit 2 237 329 - -
Trre15g03081 333 Pfam ATPase family associated with various cellular activities (AAA) 51 169 IPR003959 GO:0005524|GO:0016887
Trre15g03081 333 Gene3D - 173 236 - -
Trre15g03081 333 FunFam Replication factor C subunit 4 173 236 - -
Trre15g03081 333 FunFam Replication factor C subunit 4 9 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03081 Trre-Chr15 27955433 27960011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03081 1 332 Core DNA Replication Machinery Family AT1G63160 90.060 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03081 K10755 - gmx:100781364 610.527