Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03057 ATGGCGTCTCTACAACACACCACAGCTTCACTCCATTCCAAACCCATCCCCAAAATCACAAACATCCTCACCCAAAAACCCATCCTCAACTTCTCTCTATCCAGCACCACAACCTTCACCTCTCCCAAACTCAAATTCTCCATAACCAAAACTCGCCGCTCCACCGGCGGAGGAGCACTCGGTTCCACAATGTCATCCCCAGCCGCCGGCAGCTACGCAACCGCTTTAGCTGATTTAGCTAAATCAAACAACACCCTCGACGCAACAACCGCAGATATCGACAAAATCGATGAACTTTTTTCTGACCGCAAGGTGTTTGATTATTTTTCCAGCCCAATTATCGCTGATGCCGCGAAACGCAAATTAATAGCAGAGTTTGCTACTTCATCTGGGATTCAACCACACACACAAAACTTCCTTAACATCTTGATTGATTCTAAGAGGATCGATATCATTACCGACATTGTTAAGGAGTTTGAACTTGTTTACAATAGGTTGACTGATACTGAACTTGTGGTTGTGACTTCTGTTGTGAAGTTGGAATCAGAGCATTTGGCGCAGATTGCGAAACAGGTTCAGAAGCTTACCGGGGCTAAGAATGTCAGGATTAAGACTGTTCTTGATTCTAGTTTGGTGGCTGGTTTTACTATCAGGTATGGGAATTCTGGGTCTAAGTTTATTGATATGAGTGTTAAGAAGAAACTTGAGGAAATTGCTGCTCAACTTGATTTGGGCGATATCAAACTCGCTGTATGA 756 0.4392 MASLQHTTASLHSKPIPKITNILTQKPILNFSLSSTTTFTSPKLKFSITKTRRSTGGGALGSTMSSPAAGSYATALADLAKSNNTLDATTADIDKIDELFSDRKVFDYFSSPIIADAAKRKLIAEFATSSGIQPHTQNFLNILIDSKRIDIITDIVKEFELVYNRLTDTELVVVTSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVLDSSLVAGFTIRYGNSGSKFIDMSVKKKLEEIAAQLDLGDIKLAV 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03057 251 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 201 220 IPR020781 GO:0015986|GO:0016020|GO:0046933
Trre15g03057 251 Gene3D - 68 160 IPR026015 -
Trre15g03057 251 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 66 167 IPR026015 -
Trre15g03057 251 PANTHER ATP SYNTHASE DELTA CHAIN 52 243 IPR000711 GO:0015986|GO:0046933
Trre15g03057 251 Pfam ATP synthase delta (OSCP) subunit 69 242 IPR000711 GO:0015986|GO:0046933
Trre15g03057 251 Hamap ATP synthase subunit delta [atpD]. 64 244 IPR000711 GO:0015986|GO:0046933
Trre15g03057 251 NCBIfam ATP synthase F1 subunit delta 69 242 IPR000711 GO:0015986|GO:0046933
Trre15g03057 251 PRINTS ATP synthase delta subunit signature 199 214 IPR000711 GO:0015986|GO:0046933
Trre15g03057 251 PRINTS ATP synthase delta subunit signature 68 87 IPR000711 GO:0015986|GO:0046933
Trre15g03057 251 PRINTS ATP synthase delta subunit signature 217 235 IPR000711 GO:0015986|GO:0046933
Trre15g03057 251 PRINTS ATP synthase delta subunit signature 137 148 IPR000711 GO:0015986|GO:0046933
Trre15g03057 251 PRINTS ATP synthase delta subunit signature 148 162 IPR000711 GO:0015986|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03057 Trre-Chr15 27676283 27677038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03057 1 250 Primary Pumps ATPases AT4G09650 56.400 6.34e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03057 K02113 - gmx:100815063 317.005