Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03053 ATGCTACGAGAGCTTATTCTACACAGCCATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCACTTTTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATTCCAAAGTTGGAATAACGAGCCGGAAAAATTGATGCCATGGCCGAGAAATAATGACCGGCCAGCAGAAAGTTTCCAACCTCGTGGCACAAACAGCGGGCCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGATGAGAAAAATACCACCATCTCCCCAACAATTCATGGGGGCGCCCATAATATGGAATCTGGCTTGACCACACCAACTGCCTTCAAGACAATGGATCATCAGTCTGGAATAATGAATAAGGCTCTTCCAATTCCTATTTCTTCCCAACCAAATTTCTTCACTTCATCCCAAATTGGTGGTTCTGGTGGAGCAGTGTCTCAACTCAGACATAGATTAGCATCTGATGCAGAGAACACGATTTATCAACCTTCAGTAGAAACTCAAGCTATGACTTCAACCAGTGAAAAACTCAAAGAGAAAGAGCTCACTATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTGA 612 0.4216 MLRELILHSHQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQSWNNEPEKLMPWPRNNDRPAESFQPRGTNSGPNPSPTLLFASKIDEKNTTISPTIHGGAHNMESGLTTPTAFKTMDHQSGIMNKALPIPISSQPNFFTSSQIGGSGGAVSQLRHRLASDAENTIYQPSVETQAMTSTSEKLKEKELTIEGGAISISSVYSKG 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03053 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 29 IPR011598 GO:0046983
Trre15g03053 203 MobiDBLite consensus disorder prediction 62 78 - -
Trre15g03053 203 Gene3D - 1 51 IPR036638 GO:0046983
Trre15g03053 203 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 203 IPR044295 GO:0003700|GO:0006351|GO:0046983
Trre15g03053 203 MobiDBLite consensus disorder prediction 49 78 - -
Trre15g03053 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 52 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03053 Trre-Chr15 27636568 27637493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03053 1 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 38.424 2.20e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03053 - - gmx:100808016 319.701