Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03052 ATGTTAAAAGAGACATTTGCAAATTGTGATGGAAGAGGCGTAACAAGAACTTTCCTTTTCTTAATTATGAGTCATAGAAAATATATTGTTCATAATCATCTTATAGAACATTTGAATCAATCATGTAGGTTTCAAATGCTACGAGAGCTTATTCTACACAGCCATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCACTTTTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATTCCAAAGTTGGAATAACGAGCCGGAAAAATTGATGCCATGGCCGAGAAATAATGACCGGCCAGCAGAAAGTTTCCAACCTCGTGGCACAAACAGCGGGCCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGATGAGAAAAATACCACCATCTCCCCAACAATTCATGGGGGCGCCCATAATATGGAATCTGGCTTGACCACACCAACTGCCTTCAAGACAATGGATCATCAGTCTGGAATAATGAATAAGGCTCTTCCAATTCCTATTTCTTCCCAACCAAATTTCTTCACTTCATCCCAAATTGGTGGTTCTGGTGGAGCAGTGTCTCAACTCAGACATAGATTAGCATCTGATGCAGAGAACACGATTTATCAACCTTCAGTAGAAACTCAAGCTATGACTTCAACCAGTGAAAAACTCAAAGAGAAAGAGCTCACTATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTGA 747 0.3963 MLKETFANCDGRGVTRTFLFLIMSHRKYIVHNHLIEHLNQSCRFQMLRELILHSHQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQSWNNEPEKLMPWPRNNDRPAESFQPRGTNSGPNPSPTLLFASKIDEKNTTISPTIHGGAHNMESGLTTPTAFKTMDHQSGIMNKALPIPISSQPNFFTSSQIGGSGGAVSQLRHRLASDAENTIYQPSVETQAMTSTSEKLKEKELTIEGGAISISSVYSKG 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03052 248 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 43 248 IPR044295 GO:0003700|GO:0006351|GO:0046983
Trre15g03052 248 Pfam Helix-loop-helix DNA-binding domain 43 75 IPR011598 GO:0046983
Trre15g03052 248 MobiDBLite consensus disorder prediction 107 122 - -
Trre15g03052 248 MobiDBLite consensus disorder prediction 94 122 - -
Trre15g03052 248 Gene3D - 36 96 IPR036638 GO:0046983
Trre15g03052 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 97 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03052 Trre-Chr15 27636433 27637493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03052 43 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 39.806 1.20e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g03052 HLH 0.00019 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03052 - - gmx:100808016 325.865