Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03043 ATGGAGTCTCCCTCCGGTGCGCACTTCTACCGCTGGCATCCTTCATCCTCCTCCTCTTCTTCTCCAACAGAGATTCCCTCTCCTAACATCTTCATCATCGGAGTCTCTGGAGGTACTGCATCCGGGAAAACTACTGTGTGTGATATGATTATTCAACAACTGCAAGATCACAGAGTTGTTCTTGTCAATCAGGATTCGTTTTATCGTGGTTTAACAAATGATGAGTGCAAACGCGTTCATGAGTATAATTTTGATCATCCTGATGCATTTGATACAGAGCAACTTGTAGAAACACTCATCAAGCTTAAATCTGGACAGTCGGTTCAGGTTCCTATTTATGATTTTAAGCTCCACCAAAGAGCTTCTGACAGACACCGACAGGTCAATGCATCTGATGTAATCATTATGGAGGGTATATTGGTTTTTCATGAACAGCGTGTCCGCGACATGATGAATATGAAGATATTTGTTGATGCAGATCCGGATGTAAGGCTTGGCCGCAGAATAAAACGAGATACTGTTGAGAGGGGTAGAGATGTGCACTCTGTACTGGAACAGTATGCTAAATTTGTTAAGCCCGCCTTCGATGATTTTATTCTTCCAACTAAAAAGTATGCGGACATAATCATACCTCGTGGGGGAGATAATCATGTAGCAATTGACTTGATCGTTCAACATATCCGCACTAAGCTTGGGCAGCATAACCTCTGTAAGATATATCCAAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATCCGTGATAAGGAAATATCAAAGCATGACTTTGTTTTTTATTCAGATAGGCTAATTCGTTTGGTAGTGGAACACGGTCTCGGTTACTTGCCATTTACAGAGAAACAAGTTACCACTCCTACAGGATCAATTTATATTGGAGTTGATTTTTGTAAGAAATTGTGTGGAGTATCTGTTATTAGAAGTGGTGAAAGCATGGAAAATGCTCTGCGTGCATGCTGTAAAGGAATAAAAATAGGAAAAATTCTCATCCATAGAGAACGTGATGAAACCCAGCTTATTTATGAGAAGCTCCCTAAAGATATTTCAGAGAGACATGTTCTTCTCATGGATCCAGTACTTGGTACAGGCAACACTGCCAGCCAAGCAATCGAGCTTCTTATAAAGAAGGGAGTTCCAGAGTCACGGATAATTTTCCTCAATCTAGTCTCTGCTCCCGAGGGAATACATTATGTATGTAAACGTTTTTCGCAACTGAAAGTTGTCACTTCCGAGATTGAAGAAGGACTAAATGACCAGTTCCGTGTTGTTCCTGGGTTAGGAGAATTTGGTGACCGGTATTTTGGTACAGACGACTCCTAA 1356 0.4108 MESPSGAHFYRWHPSSSSSSSPTEIPSPNIFIIGVSGGTASGKTTVCDMIIQQLQDHRVVLVNQDSFYRGLTNDECKRVHEYNFDHPDAFDTEQLVETLIKLKSGQSVQVPIYDFKLHQRASDRHRQVNASDVIIMEGILVFHEQRVRDMMNMKIFVDADPDVRLGRRIKRDTVERGRDVHSVLEQYAKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDKEISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVTTPTGSIYIGVDFCKKLCGVSVIRSGESMENALRACCKGIKIGKILIHRERDETQLIYEKLPKDISERHVLLMDPVLGTGNTASQAIELLIKKGVPESRIIFLNLVSAPEGIHYVCKRFSQLKVVTSEIEEGLNDQFRVVPGLGEFGDRYFGTDDS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03043 451 Gene3D - 27 233 IPR027417 -
Trre15g03043 451 ProSiteProfiles UvrC family, homology region profile. 118 219 IPR001162 GO:0009381
Trre15g03043 451 FunFam Uridine kinase 234 448 - -
Trre15g03043 451 CDD UMPK 32 230 IPR000764 -
Trre15g03043 451 CDD PRTases_typeI 303 410 IPR000836 -
Trre15g03043 451 MobiDBLite consensus disorder prediction 10 24 - -
Trre15g03043 451 PRINTS Uridine kinase signature 176 187 - -
Trre15g03043 451 PRINTS Uridine kinase signature 60 71 - -
Trre15g03043 451 PRINTS Uridine kinase signature 30 47 - -
Trre15g03043 451 PRINTS Uridine kinase signature 162 172 - -
Trre15g03043 451 PRINTS Uridine kinase signature 198 211 - -
Trre15g03043 451 PRINTS Uridine kinase signature 105 120 - -
Trre15g03043 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 223 IPR027417 -
Trre15g03043 451 Pfam Phosphoribulokinase / Uridine kinase family 32 218 IPR006083 GO:0005524|GO:0016301
Trre15g03043 451 MobiDBLite consensus disorder prediction 1 24 - -
Trre15g03043 451 Gene3D - 234 448 IPR029057 -
Trre15g03043 451 SUPERFAMILY PRTase-like 233 449 IPR029057 -
Trre15g03043 451 Pfam Uracil phosphoribosyltransferase 248 448 - -
Trre15g03043 451 NCBIfam uridine kinase 29 230 IPR000764 -
Trre15g03043 451 PANTHER URIDINE KINASE 27 359 - -
Trre15g03043 451 FunFam Uridine kinase 27 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03043 Trre-Chr15 27468227 27473619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03043 31 450 PRT Gene Family AT5G40870 83.135 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03043 K00876 - gmx:100816209 793.112