Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03026 ATGTGTTTGAATGCAAGTATCACAAAGGACATTGCTTATCATGAATACACCAGGCCAACTTCTATCCAGGGCCAGGCACAGGCTATGCCTATTGCTCTTACTGGAAGGGATCTTTTGGGTTGTGCTGAAACTGGTAGTGGGAAGACTGCAGCTTTCACGATTCCTATGATACAGCATTGCTTGGCCCAGCCTCCAATTCGGCGAGGAGATGGTCCCCTGGCATTAGTTTTGGCTCCTACTAGGGAACTTGCTCAACAAATAGAAAAAGAGGTTGCGGAAATCCTAGAATTTGTTACCAATATCAAGGAAGATAATCCTACACACCTTTGA 330 0.4515 MCLNASITKDIAYHEYTRPTSIQGQAQAMPIALTGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVAEILEFVTNIKEDNPTHL 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03026 109 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 29 109 IPR014001 -
Trre15g03026 109 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 5 98 - -
Trre15g03026 109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 98 IPR027417 -
Trre15g03026 109 Gene3D - 1 103 IPR027417 -
Trre15g03026 109 Pfam DEAD/DEAH box helicase 24 99 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03026 Trre-Chr15 27338486 27339352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03026 1 94 Eukaryotic Initiation Factors Gene Family AT3G19760 35.106 2.13e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03026 K12823 - nnu:104594469 167.162