Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g03026 | ATGTGTTTGAATGCAAGTATCACAAAGGACATTGCTTATCATGAATACACCAGGCCAACTTCTATCCAGGGCCAGGCACAGGCTATGCCTATTGCTCTTACTGGAAGGGATCTTTTGGGTTGTGCTGAAACTGGTAGTGGGAAGACTGCAGCTTTCACGATTCCTATGATACAGCATTGCTTGGCCCAGCCTCCAATTCGGCGAGGAGATGGTCCCCTGGCATTAGTTTTGGCTCCTACTAGGGAACTTGCTCAACAAATAGAAAAAGAGGTTGCGGAAATCCTAGAATTTGTTACCAATATCAAGGAAGATAATCCTACACACCTTTGA | 330 | 0.4515 | MCLNASITKDIAYHEYTRPTSIQGQAQAMPIALTGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVAEILEFVTNIKEDNPTHL | 109 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g03026 | 109 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 29 | 109 | IPR014001 | - | |
Trre15g03026 | 109 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 5 | 98 | - | - | |
Trre15g03026 | 109 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 98 | IPR027417 | - | |
Trre15g03026 | 109 | Gene3D | - | 1 | 103 | IPR027417 | - | |
Trre15g03026 | 109 | Pfam | DEAD/DEAH box helicase | 24 | 99 | IPR011545 | GO:0003676|GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g03026 | Trre-Chr15 | 27338486 | 27339352 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g03026 | 1 | 94 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 35.106 | 2.13e-09 | 51.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g03026 | K12823 | - | nnu:104594469 | 167.162 |