Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03023 ATGGCGGCAGGGAGACAAAGTGTTTTAGGGAAAAGAGAATCTTACATACATGGTTCTGTCAAGGAATTTGATTACTGTAAGAAAGATTCTTACGGAAAAGATGATAGAGAAGAAGGTGAGATCCTTGTTGATGGGGATGAAGCCTTTTCACGTCCAGAAAAGAGAAGAAAATTCTCACCTATTGTATGGGATATGGCTGAGAAGAAAGGGAAGGTTTCTTCCAAAGATAGGGTCACACATGTTGCCGAGTCTCTAACTCGTTCATCTGCTAGTCCTGGAGGCAATGGGTCTTCGATGAATTCCTCTTGTGTGGATGAAGAAAGTGATCTGCAGGGATGGAATATGACAAAGTCAAAGTGGGCTTCTGATGATTTTTCACCGATCGGTGATGATGTTAAGTACAAGCAACACAAAAGAAGCTCAAGTTCAGAAGTTGGTGGTTCTTCGGATAGCACGATTACTAGATCTGATGTTGATGAAGAGGATAGTGATTCTCCATCAGATTCTTTTGAAAATAGTGGTGAGATGCATATGCAGAGAAATTTTAACATGTGTCAGAGTTGCAGAAGTGTGTCCGAGTTTGAAATGATTAAGAAAATAAATGATGGAACTTATGGTGTTGTCTATAAAGCTAAGGATAAGAAGACTGGAGAAATTGTAGCACTTAAGAAAGTGAAGATGGAAATGGAGAGGGATGGCTTTCCAATGACAGCCCTGAGAGAAATGAATATTCTCTTGTCTTTAGACCATCCTTCCATTGTGGATGTTAAAGAAGTTGTCGTGGATGATGATGACTGCGATGATGGTACTTATATGGTAATGGAACATATGCAATACGATCTCAAACAATTGATGGAGGCAAAGACACAGCCTTTTAGTATGGGCGAAATTAAATCTTTCATGAAGCAACTTCTTGAAGGAGTCAAGTATCTCCACGATAACTGGATTCTTCATAGGGATTTGAAGACATCTAACATTCTGTTGAATAAAGATGGACATCTGAAAATATGCGACTTTGGAATGTCAAGGCAGTATGGAAGTCCTCTGAAGCAATATACTTCTCTTGTGGTTACACTATGGTACAGAGCACCTGAACTTTTGTTGGGCGCTAAAAAATACTCCAAAGCAATTGATATGTGGTCAGTGGGTTGTATAATGGCCGAATTACTTTCAAAGGAGCCACTTTTCAAGGGTAAAACAGAAATCGAACAACTTGACAAGATTTTTCGAACCCTTGGTACACCAGATGAGAAAATATGGCCAGGATTATCCAAATTGCCTGGATCTAAAGCAAATTTTGTTAAGCAACGGTGTAGTATGCTAAGGATGAAGTTTCCAGCTGCATCTTTCACTGGGTTGCCAGTTTTATCTGAGTCGGGGTTTGACTTGTTGAATAAGCTTCTAGCGTATGATCCTGAAAAGAGGATATCTGCCGAAGCTGCTCTGCAACATGATTGGTTTCATGAAGGTCCACTTCCCCGATCTGATTTCAATCCAATTTTTTCCTCGTGGTAG 1515 0.4 MAAGRQSVLGKRESYIHGSVKEFDYCKKDSYGKDDREEGEILVDGDEAFSRPEKRRKFSPIVWDMAEKKGKVSSKDRVTHVAESLTRSSASPGGNGSSMNSSCVDEESDLQGWNMTKSKWASDDFSPIGDDVKYKQHKRSSSSEVGGSSDSTITRSDVDEEDSDSPSDSFENSGEMHMQRNFNMCQSCRSVSEFEMIKKINDGTYGVVYKAKDKKTGEIVALKKVKMEMERDGFPMTALREMNILLSLDHPSIVDVKEVVVDDDDCDDGTYMVMEHMQYDLKQLMEAKTQPFSMGEIKSFMKQLLEGVKYLHDNWILHRDLKTSNILLNKDGHLKICDFGMSRQYGSPLKQYTSLVVTLWYRAPELLLGAKKYSKAIDMWSVGCIMAELLSKEPLFKGKTEIEQLDKIFRTLGTPDEKIWPGLSKLPGSKANFVKQRCSMLRMKFPAASFTGLPVLSESGFDLLNKLLAYDPEKRISAEAALQHDWFHEGPLPRSDFNPIFSSW 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03023 504 MobiDBLite consensus disorder prediction 83 108 - -
Trre15g03023 504 MobiDBLite consensus disorder prediction 131 174 - -
Trre15g03023 504 SMART serkin_6 194 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03023 504 CDD STKc_CDC2L1 188 487 IPR045267 GO:0004674|GO:0005524|GO:0006468
Trre15g03023 504 MobiDBLite consensus disorder prediction 69 108 - -
Trre15g03023 504 Gene3D Transferase(Phosphotransferase) domain 1 279 494 - -
Trre15g03023 504 Gene3D Phosphorylase Kinase; domain 1 176 278 - -
Trre15g03023 504 PANTHER CELL DIVISION PROTEIN KINASE 192 493 - -
Trre15g03023 504 ProSiteProfiles Protein kinase domain profile. 194 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03023 504 Pfam Protein kinase domain 194 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g03023 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Trre15g03023 504 FunFam Cyclin-dependent kinase G-2 279 504 - -
Trre15g03023 504 SUPERFAMILY Protein kinase-like (PK-like) 186 492 IPR011009 -
Trre15g03023 504 FunFam cyclin-dependent kinase G-2 isoform X1 179 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03023 Trre-Chr15 27310226 27312163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03023 189 493 Core Cell Cycle Gene Families AT5G10270 47.484 1.97e-92 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Trre15g03023 Pkinase 8.4e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03023 K08818 - gmx:100788840 623.239