Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03013 ATGTCCCCTAACCTTTATTATACTACTAATACCTTCAAAGGTGAAGTAGATTATAACAATGATGAAAATCCATTAATGGGTTGTTATGCATCTTTATATCCTAATATGCCTATTTTGGAAAACAGTTCTAATTCATCATGGATTATTCCATATTCTGATGATAGTGAAACCATTAGGGATCATAAGAAATTGAAAAGATCAACTATAACTATCCCTATTTTGTTTGCAAATATCAGCAACCATAACTCAAACAGCATCAATACTTTCTTCAAAAACAGTATCAAAAGCAGTGTGAATAGCATACCAAGGCTTCATTTTAGAGATCACATAAGAACTTATAAGCAAAGATATTTTGCTGCTGAAGCTGTTGAAGAAGCAGCTGAAGAACATTTCAACTATAATAATTCTGAAGCTGATGAAGAAGATGGAACATGTGCTGATGGAATGAGATTAGTTCAACTTTTGATTGCTTGTGCTGAAGCTGTAGCGTGTCGCGACAAATCGCACGCTTCGGTTTTATTATCTGAACTTAAATCAAATGCTTTGGTGTTTGGTTCATCATTCCAAAGAGTTGCTTCTTGTTTTGTTCAAGGATTAACAGAGAGATTAACTCTGATTCAACCAATTGGTAATAATTCTGTTGGATCAGATACAAAATCAATGATGAACATAATGGATGCTGCATCAGAAGAAATGGAAGAAGCATTCAAATTGGTTTATGAGATATGTCCACATCTTCAATTTGGACATTTTGTGGCTAATTCCATAATATTGGAAGCCTTTGAGGGTGAGAGTTTTGTTCATGTGGTTGACTTAGGCATGAGTCTAGGTCTACCACACGGACACCAATGGCGAGGACTAATTCAAAGTCTCGCAAATCGATCTGGTAGTCAACGTGTTCTTCGTCGGCTTAGGATCACAGCGGTTGGTCTATGCATTGCTAGAATCCAAGTCATTGGTGAAGAACTCTCAATTTACGCGAAAAATTTAGGGGTTCATTTGGAATTCTCAATCGTTGAGAAGAATTTAGAGAACTTGAAACCTGAAGATATAAAAGTGAATGAAAAAGAGGTTCTTGTGGTTAACAGCATTCTTCAATTGCACTGTGTTGTTAAAGAGAGTCGCGGCGCTTTAAATTCGGTTTTACAAATGGTACATGGTCTTTCGCCGAAAGTTTTGGTGATGGTTGAACAAGATTCAGGTCACAATGGACCTTTCTTTCTTGGAAGGTTTATGGAATCATTGCATTACTATTCTGCTATTTTTGACTCATTGGATGCTATGCTACCAAAATATGATACCAAGAGAGCAAAAATGGAACAGTTTTATTTTGCTGAGGAGATAAAGAACATTGTGAGCTGTGAAGGACCATTGAGGATGGAGAGGCATGAAAAAGTTGATCAATGGAGGAGGAGAATGAGTAGGGCTGGATTTCAAGGCGCGCCGATTAAGATGGTGGTTCAAGCTAAGCAATGGCTTTTGAAGAATAAGATTTGTGATGGATATACTGTTGTTGAAGAGAAAGGTTGCTTGGTTCTTGGATGGAAATCAAAGCCAATTGTTGCAGTTTCTTGCTGGAAATGCTGA 1587 0.3711 MSPNLYYTTNTFKGEVDYNNDENPLMGCYASLYPNMPILENSSNSSWIIPYSDDSETIRDHKKLKRSTITIPILFANISNHNSNSINTFFKNSIKSSVNSIPRLHFRDHIRTYKQRYFAAEAVEEAAEEHFNYNNSEADEEDGTCADGMRLVQLLIACAEAVACRDKSHASVLLSELKSNALVFGSSFQRVASCFVQGLTERLTLIQPIGNNSVGSDTKSMMNIMDAASEEMEEAFKLVYEICPHLQFGHFVANSIILEAFEGESFVHVVDLGMSLGLPHGHQWRGLIQSLANRSGSQRVLRRLRITAVGLCIARIQVIGEELSIYAKNLGVHLEFSIVEKNLENLKPEDIKVNEKEVLVVNSILQLHCVVKESRGALNSVLQMVHGLSPKVLVMVEQDSGHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQGAPIKMVVQAKQWLLKNKICDGYTVVEEKGCLVLGWKSKPIVAVSCWKC 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03013 528 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 122 522 IPR005202 -
Trre15g03013 528 Pfam GRAS domain family 151 527 IPR005202 -
Trre15g03013 528 ProSiteProfiles GRAS family profile. 142 527 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03013 Trre-Chr15 27155195 27156781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03013 148 527 GRAS Transcription Factor Family AT1G66350 37.500 3.49e-76 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre15g03013 GRAS 6.8e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03013 - - gmx:100815959 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03013 15 27155195 27156781 Trre15g03013 15 27155195 27156781 ECH