Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02999 ATGGAGCATTCTGAAACCGATTTAGCTCCTCTTTCCAACGGGGTACAACCCCAACAACTTTCTGACAAAGATTCTTCTTCTCCTTTTGTTGATCATTCTCCACCGTCAGATCTCAATCAAACGGCTGAGAATGATAATGATCATGATGCACTTGCTGTCGAGCTTCATGATAAGTTGGATTTGAAGGTTCTAGATGAAAGGGTTGTTGAAACTGATGATAAAGTTTCTAACTTTAACGATGGTGGAGAAGTTTCCGTTGAAGAAGAATCTGTTAAGGGGTTTGATGGTGATAGCAAGGGTTGGGATACTAATAGTTGGAATGAGAATGTGAATGAAGAGCTTGGTGGTGGTAGAGATGCTGATGGTTATGATTATGGTGGTGGTGGTGGGTATGGTGATGGTTATGGCTATGGTGATGGGTATGGTTATGGTAATACTGATGGAGTTGAAGACAAGGGAGAGAAAAGTGGTGATGGGCCCCACCAGTTCCCTTTGAGGCCTGAAGCTGAAGATTGTTCCTTTTATATGAAGACTGGGAATTGCAAGTTTGGGTTCAACTGCAGATTTAATCACCCTATTAGGAGGAAAAACCAGGCTGTTATTAGGGAGAAGGTGCGAGAAAGAGAAGAACCTGCAGAAAACCCAGGCCAGACGGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGCAAGTTCAACCACACAAGAGGGTTTACAGCACCAATTTCAGAACTTAACTTTCTTGGTTTACCTATTCGTCTGGGAGAAAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCAAACTGTAGGTTTAATCATCCCGATCCTACAACTGTGGGAGGAGGTGATCCTCAATCAGGGTTTGGTAACGGAGGGTCCACTGCTCTAAGAGGTGTATCACAACAATCTTCTTCCTCATGGTCTTCTTCAAGAAAGTTAAATGAAACACCTTTTGTGCCAATGGTGATTACGCCTACTCAAGGAATTGCTCCCCAAAGTCCTGATTGGAATGGATATCAGGCACCTGGCTACTTACCTGAGAGGGTCATGCATCCATCTTCTACATATGTGTTGAACAACCCACCAATTGAAACAAATACTTACATGCACCATCAAAAGCAGATGCCAATTGAAGTTTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGTTTCTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAGTTTCACCATCCAAAGAACCGGATTGCACGATTGCCTCCTTGTATCCTCAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGAGTGTCTGCTCGCACTATAGTCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAGATTTGACCACCCAGAAAGTGCACTTCCCTTAATGATGCCTGGACTCGGACAGCAATCCTATGCAAACTCGGCTAATGCTCAGGTGGCTGGGATGGGTGGAAGTGCAAGTGATGCGACAATTCAGCAATCTGTGTAA 1518 0.4381 MEHSETDLAPLSNGVQPQQLSDKDSSSPFVDHSPPSDLNQTAENDNDHDALAVELHDKLDLKVLDERVVETDDKVSNFNDGGEVSVEEESVKGFDGDSKGWDTNSWNENVNEELGGGRDADGYDYGGGGGYGDGYGYGDGYGYGNTDGVEDKGEKSGDGPHQFPLRPEAEDCSFYMKTGNCKFGFNCRFNHPIRRKNQAVIREKVREREEPAENPGQTECKYYQRSGGCKFGKACKFNHTRGFTAPISELNFLGLPIRLGERECPYYMRTGSCKFGSNCRFNHPDPTTVGGGDPQSGFGNGGSTALRGVSQQSSSSWSSSRKLNETPFVPMVITPTQGIAPQSPDWNGYQAPGYLPERVMHPSSTYVLNNPPIETNTYMHHQKQMPIEVFPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRIARLPPCILSDKGLPLRPDQSVCSHYSRYGICKFGPACRFDHPESALPLMMPGLGQQSYANSANAQVAGMGGSASDATIQQSV 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02999 505 MobiDBLite consensus disorder prediction 1 49 - -
Trre15g02999 505 MobiDBLite consensus disorder prediction 286 322 - -
Trre15g02999 505 ProSiteProfiles Zinc finger C3H1-type profile. 214 242 IPR000571 GO:0046872
Trre15g02999 505 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Trre15g02999 505 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 170 192 IPR000571 GO:0046872
Trre15g02999 505 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 441 466 IPR000571 GO:0046872
Trre15g02999 505 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 239 IPR000571 GO:0046872
Trre15g02999 505 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 395 420 IPR000571 GO:0046872
Trre15g02999 505 SUPERFAMILY CCCH zinc finger 259 285 IPR036855 GO:0046872
Trre15g02999 505 SUPERFAMILY CCCH zinc finger 218 241 IPR036855 GO:0046872
Trre15g02999 505 ProSiteProfiles Zinc finger C3H1-type profile. 393 421 IPR000571 GO:0046872
Trre15g02999 505 MobiDBLite consensus disorder prediction 293 322 - -
Trre15g02999 505 Gene3D - 147 207 - -
Trre15g02999 505 SMART c3hfinal6 166 193 IPR000571 GO:0046872
Trre15g02999 505 SMART c3hfinal6 258 285 IPR000571 GO:0046872
Trre15g02999 505 SMART c3hfinal6 439 466 IPR000571 GO:0046872
Trre15g02999 505 SMART c3hfinal6 393 420 IPR000571 GO:0046872
Trre15g02999 505 SMART c3hfinal6 214 241 IPR000571 GO:0046872
Trre15g02999 505 MobiDBLite consensus disorder prediction 9 41 - -
Trre15g02999 505 PANTHER PROTEIN PHOSPHATASE RELATED 33 484 - -
Trre15g02999 505 SUPERFAMILY CCCH zinc finger 167 194 IPR036855 GO:0046872
Trre15g02999 505 SUPERFAMILY CCCH zinc finger 397 422 IPR036855 GO:0046872
Trre15g02999 505 ProSiteProfiles Zinc finger C3H1-type profile. 258 286 IPR000571 GO:0046872
Trre15g02999 505 MobiDBLite consensus disorder prediction 74 106 - -
Trre15g02999 505 Gene3D - 211 291 - -
Trre15g02999 505 Gene3D - 392 474 - -
Trre15g02999 505 ProSiteProfiles Zinc finger C3H1-type profile. 166 194 IPR000571 GO:0046872
Trre15g02999 505 ProSiteProfiles Zinc finger C3H1-type profile. 439 467 IPR000571 GO:0046872
Trre15g02999 505 SUPERFAMILY CCCH zinc finger 440 469 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02999 Trre-Chr15 27083157 27086681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02999 390 490 C2H2 Transcription Factor Family AT3G02830 45.098 3.67e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g02999 zf-CCCH 1.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02999 - - tpra:123882932 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02999 15 27083157 27086681 Trre15g02999 15 27083157 27086681 ECH