Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02998 ATGAAGGGGATGGATTGGACTGCAGGAAAAAAATTACTGGAGAGGATCTTTTCACGTGGAGGGAGTATGGAGCATTCTGAAACCGATTTAGCTCCTCTTTCCAACGGGGTACAACCCCAACAACTTTCTGACAAAGATTCTTCTTCTCCTTTTGTTGATCATTCTCCACCGTCAGATCTCAATCAAACGGCTGAGAATGATAATGATCATGATGCACTTGCTGTCGAGCTTCATGATAAGTTGGATTTGAAGGTTCTAGATGAAAGGGTTGTTGAAACTGATGATAAAGTTTCTAACTTTAACGATGGTGGAGAAGTTTCCGTTGAAGAAGAATCTGTTAAGGGTGAAGTAGTAGTAGTAGAAGAAGAAGAATCTGTGAAGGGTGAAATAGTAGAAGAAGATGAATCTGTTAAGGGTGAAAATGAAGAGGAATCTGTCAAGGGTGAAGTAGACGAAGAAGAATCTTTTAAGGATGAAGTAGAAGAAGAATCTGTCAAGGGTGAAGAAGGGTTTGATGGTGATAGCAAGGGTTGGGATACTAATAGTTGGAATGAGAATGTGAATGAAGAGCTTGGTGGTGGTAGAGATGCTGATGGTTATGATTATGGTGGTGGTGGTGGGTATGGTGATGGTTATGGCTATGGTGATGGGTATGGTTATGGTAATACTGATGGAGTTGAAGACAAGGGAGAGAAAAGTGGTGATGGGCCCCACCAGTTCCCTTTGAGGCCTGAAGCTGAAGATTGTTCCTTTTATATGAAGACTGGGAATTGCAAGTTTGGGTTCAACTGCAGATTTAATCACCCTATTAGGAGGAAAAACCAGGCTGTTATTAGGGAGAAGGTGCGAGAAAGAGAAGAACCTGCAGAAAACCCAGGCCAGACGGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGCAAGTTCAACCACACAAGAGGGTTTACAGCACCAATTTCAGAACTTAACTTTCTTGGTTTACCTATTCGTCTGGGAGAAAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCAAACTGTAGGTTTAATCATCCCGATCCTACAACTGTGGGAGGAGGTGATCCTCAATCAGGGTTTGGTAACGGAGGGTCCACTGCTCTAAGAGGTGTATCACAACAATCTTCTTCCTCATGGTCTTCTTCAAGAAAGTTAAATGAAACACCTTTTGTGCCAATGGTGATTACGCCTACTCAAGGAATTGCTCCCCAAAGTCCTGATTGGAATGGATATCAGGCACCTGGCTACTTACCTGAGAGGGTCATGCATCCATCTTCTACATATGTGTTGAACAACCCACCAATTGAAACAAATACTTACATGCACCATCAAAAGCAGATGCCAATTGAAGTTTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGTTTCTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAGTTTCACCATCCAAAGAACCGGATTGCACGATTGCCTCCTTGTATCCTCAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGAGTGTCTGCTCGCACTATAGTCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAGATTTGACCACCCAGAAAGTGCACTTCCCTTAATGATGCCTGGACTCGGACAGCAATCCTATGCAAACTCGGCTAATGCTCAGGTGGCTGGGATGGGTGGAAGTGCAAGTGATGCGACAATTCAGCAATCTGTGTAA 1749 0.4328 MKGMDWTAGKKLLERIFSRGGSMEHSETDLAPLSNGVQPQQLSDKDSSSPFVDHSPPSDLNQTAENDNDHDALAVELHDKLDLKVLDERVVETDDKVSNFNDGGEVSVEEESVKGEVVVVEEEESVKGEIVEEDESVKGENEEESVKGEVDEEESFKDEVEEESVKGEEGFDGDSKGWDTNSWNENVNEELGGGRDADGYDYGGGGGYGDGYGYGDGYGYGNTDGVEDKGEKSGDGPHQFPLRPEAEDCSFYMKTGNCKFGFNCRFNHPIRRKNQAVIREKVREREEPAENPGQTECKYYQRSGGCKFGKACKFNHTRGFTAPISELNFLGLPIRLGERECPYYMRTGSCKFGSNCRFNHPDPTTVGGGDPQSGFGNGGSTALRGVSQQSSSSWSSSRKLNETPFVPMVITPTQGIAPQSPDWNGYQAPGYLPERVMHPSSTYVLNNPPIETNTYMHHQKQMPIEVFPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRIARLPPCILSDKGLPLRPDQSVCSHYSRYGICKFGPACRFDHPESALPLMMPGLGQQSYANSANAQVAGMGGSASDATIQQSV 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02998 582 Gene3D - 468 549 - -
Trre15g02998 582 Gene3D - 289 368 - -
Trre15g02998 582 MobiDBLite consensus disorder prediction 123 182 - -
Trre15g02998 582 ProSiteProfiles Zinc finger C3H1-type profile. 291 319 IPR000571 GO:0046872
Trre15g02998 582 MobiDBLite consensus disorder prediction 363 399 - -
Trre15g02998 582 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 518 543 IPR000571 GO:0046872
Trre15g02998 582 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 472 497 IPR000571 GO:0046872
Trre15g02998 582 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 293 316 IPR000571 GO:0046872
Trre15g02998 582 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 337 361 IPR000571 GO:0046872
Trre15g02998 582 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 247 269 IPR000571 GO:0046872
Trre15g02998 582 SMART c3hfinal6 243 270 IPR000571 GO:0046872
Trre15g02998 582 SMART c3hfinal6 516 543 IPR000571 GO:0046872
Trre15g02998 582 SMART c3hfinal6 335 362 IPR000571 GO:0046872
Trre15g02998 582 SMART c3hfinal6 470 497 IPR000571 GO:0046872
Trre15g02998 582 SMART c3hfinal6 291 318 IPR000571 GO:0046872
Trre15g02998 582 MobiDBLite consensus disorder prediction 160 175 - -
Trre15g02998 582 MobiDBLite consensus disorder prediction 18 69 - -
Trre15g02998 582 MobiDBLite consensus disorder prediction 28 63 - -
Trre15g02998 582 Gene3D - 224 281 - -
Trre15g02998 582 ProSiteProfiles Zinc finger C3H1-type profile. 335 363 IPR000571 GO:0046872
Trre15g02998 582 SUPERFAMILY CCCH zinc finger 336 362 IPR036855 GO:0046872
Trre15g02998 582 ProSiteProfiles Zinc finger C3H1-type profile. 243 271 IPR000571 GO:0046872
Trre15g02998 582 SUPERFAMILY CCCH zinc finger 295 318 IPR036855 GO:0046872
Trre15g02998 582 MobiDBLite consensus disorder prediction 370 399 - -
Trre15g02998 582 ProSiteProfiles Zinc finger C3H1-type profile. 516 544 IPR000571 GO:0046872
Trre15g02998 582 ProSiteProfiles Zinc finger C3H1-type profile. 470 498 IPR000571 GO:0046872
Trre15g02998 582 SUPERFAMILY CCCH zinc finger 474 499 IPR036855 GO:0046872
Trre15g02998 582 SUPERFAMILY CCCH zinc finger 244 271 IPR036855 GO:0046872
Trre15g02998 582 PANTHER PROTEIN PHOSPHATASE RELATED 129 561 - -
Trre15g02998 582 SUPERFAMILY CCCH zinc finger 517 546 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02998 Trre-Chr15 27083091 27086681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02998 467 567 C2H2 Transcription Factor Family AT3G02830 45.098 4.10e-22 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g02998 zf-CCCH 2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02998 - - tpra:123882932 901.353