Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02997 ATGGCGTCCAATGAGGGATTTCTGACTGAAGGACAGAGGGAGATGTTGAAGATTGCTAGTCAAAATGCGGAGATTCTGTCTTCGTCGCCTAAGTCGCCTTCAGCTTTGCTTGCTGATCATCACATCAAAGCTCCTGCTGGTGGTGGTAAGGCTCAAACTGCTGGGATAGCTGTCAGGCATGTGCGGCGGTCACATTCTGGAAAGTATGGGCGTGCAAAGAAGGATGGTGCTGGTGGCAAGGGCACTTGGGGAAAATTGCTTGACACCGAAGTTGATTCTCACATAGACCGCAATGATCCAAATTATGACAGTGGCGAGGAACCCTATCAGCTTGTTGGATCTACTGTTACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCCTCATAGATGAATACTTTAGTAATGGGGATGTAGATTTGGCTGCATCGGACCTAAGAGAACTTGGCTCAAGTGAATATTACCCATACTTCATTAAGCGACTTGTTTCCATGGCCATGGATAGGCATGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCACTGTATGCTGATGTCATTAGTCCCACGCAGATTAGGGATGGATTTTTTATGCTTCTTGAGTCTGCTGACGATCTTGCAGTGGATATCCTGGATGCAGTTGACATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGACATTCTTCCTCCTGCCTTTCTTGCCAGGGCAAGGAAGGCACTTCCAGAATCTTCCAAGGGATATCAGGTAATCCAGACTGCCGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTTGAACGACGATGGGGTGGTAGCACTCACATTACTGTTGAAGAAGTGAAGAAAAAGATTGCTGATTTACTTAGAGAATATGTTGATAGTGGTGAGACACTTGAAGCCTGTAGGTGTGTACGTGAGTTGGGAGTTGCATTCTTCCATCACGAGGTTGTCAAGAAGGCTCTGGTGCTTGCCATGGAAATTCCTTCAGCAGAACCTTTACTGTTGAAGCTATTAAAAGAAGCAGCAGAAGAAGGACTGATTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAAGGCCTAGATGATCTTGCTCTTGATATTCCGTCAGCTAAAGCCTTGTTTCAGTCATTTGTCCCCAAGGCTATCTCTGAAGGATGGCTTGATGCTTCCTTTGCCAATCCAGCTGGTGAAGATGGGGAACTCCAAGTTGAAGATGAGAAAGTTAGGAAGTACAAAAAGGAAGCTGTAACTATAATTCACGAGTATTTTCACTCGGATGACATTCCCGAACTCATTCGAAGTCTAGAAGATCTTGGAGCACCAGAGTACAACTCAATATTTTTGAAGAGGCTAATAACACTTGCTTTGGACCGAAAGAACAGAGAAAAGGAAATGGCGTCTGTCCTGCTATCTGCACTTCATATAGAGATATTCTCAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAAATGCAGAAGATACAACACTGGACATACTGGATGCTTCAAATGAGCTTGCTCTGTTTTTAGCTCGTGCTGTGATTGATGATGTACTTGCACCATTGAACTTGGATGAAATTGGAAGCAGGCTACCACCAAAATGCAGTGGTAGTGAAACTGTGCGTATGGCTCGAACACTCTCATCTGCTCGTCATGCAGGTGAAAGGCTATTGAGATGCTGGGGCGGGGGAACTGGATGGGCTGTGGAGGATGCTAAGGACAAGATCACAAAGCTCTTGGAGGAGTACGAAAGTGGTGGGGTTGTCAGTGAAGCATGTCAGTGCATTCGGGACTTGGGGATGCCTTTCTTTAACCATGAGGTAGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGATAGGTTGCTAGATCTGCTGCAGGAGTGCTTTAGTGAAGGCCTTATCACCACCAACCAGATGACTAAAGGGTTCACCCGAATTAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCGAACGCGAAGGAAAAATTTGCTCTCTATGTGGAGCATGCCCAGAGCAAGGGCTGGCTTCTACCATCATTTGATTCCTCTGCCACAGATGTCTAA 2112 0.4555 MASNEGFLTEGQREMLKIASQNAEILSSSPKSPSALLADHHIKAPAGGGKAQTAGIAVRHVRRSHSGKYGRAKKDGAGGKGTWGKLLDTEVDSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSLIDEYFSNGDVDLAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPTQIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGYQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGETLEACRCVRELGVAFFHHEVVKKALVLAMEIPSAEPLLLKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKALFQSFVPKAISEGWLDASFANPAGEDGELQVEDEKVRKYKKEAVTIIHEYFHSDDIPELIRSLEDLGAPEYNSIFLKRLITLALDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLENAEDTTLDILDASNELALFLARAVIDDVLAPLNLDEIGSRLPPKCSGSETVRMARTLSSARHAGERLLRCWGGGTGWAVEDAKDKITKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRLLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFALYVEHAQSKGWLLPSFDSSATDV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02997 703 ProSiteProfiles MI domain profile. 122 243 IPR003891 -
Trre15g02997 703 FunFam programmed cell death protein 4 410 564 - -
Trre15g02997 703 ProSiteProfiles MI domain profile. 583 702 IPR003891 -
Trre15g02997 703 FunFam programmed cell death protein 4 114 265 - -
Trre15g02997 703 SUPERFAMILY ARM repeat 580 698 IPR016024 -
Trre15g02997 703 Gene3D - 412 563 - -
Trre15g02997 703 Gene3D - 115 263 - -
Trre15g02997 703 SUPERFAMILY ARM repeat 283 404 IPR016024 -
Trre15g02997 703 FunFam Programmed cell death protein 4 569 702 - -
Trre15g02997 703 Pfam MA3 domain 287 398 IPR003891 -
Trre15g02997 703 Pfam MA3 domain 422 531 IPR003891 -
Trre15g02997 703 Pfam MA3 domain 123 234 IPR003891 -
Trre15g02997 703 Pfam MA3 domain 585 692 IPR003891 -
Trre15g02997 703 Gene3D - 571 700 - -
Trre15g02997 703 Gene3D - 273 405 - -
Trre15g02997 703 SUPERFAMILY ARM repeat 120 280 IPR016024 -
Trre15g02997 703 ProSiteProfiles MI domain profile. 286 407 IPR003891 -
Trre15g02997 703 ProSiteProfiles MI domain profile. 420 541 IPR003891 -
Trre15g02997 703 PANTHER PROGRAMMED CELL DEATH 4 3 697 IPR039778 GO:0045892
Trre15g02997 703 SUPERFAMILY ARM repeat 418 576 IPR016024 -
Trre15g02997 703 SMART ma3_7 123 234 IPR003891 -
Trre15g02997 703 SMART ma3_7 421 532 IPR003891 -
Trre15g02997 703 SMART ma3_7 287 398 IPR003891 -
Trre15g02997 703 SMART ma3_7 584 693 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02997 Trre-Chr15 26984717 26988469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02997 587 683 Eukaryotic Initiation Factors Gene Family AT5G57870 32.000 1.61e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02997 - - gmx:100809081 1222.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02997 15 26984717 26988469 Trre15g02997 15 26984717 26988469 ECH