Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02996 ATGGATGGTAGAAGGCATTCTGTTGATGTACCAATTTCTAAAACTCTTGTGGCACTAAGGAGAGTAAGGTCATTAAGGGATCCTTCAACAAATGGTATTAGCAATCTCTCTCCTTTGATTGATAATGAGCATTGGGAAAAAAATGGGATTTCTTTAAGGTTTCTTAATGCTACTTATGCATGTGATTCTGATGATAATGGTTATTTAAGGTCAAATGATTTAGATTTTAAGGGTCATAGAGAACATGGTACTACTACTAATACTACTAATTTTGAAAAGAATTGTTATTGTGAGGAACATCAACAAGATGATGATTTTAAGGGTATTTGTGGGAATAAATCACCAAAAGAAAGTTGTTGTAGCAACCATGAAGCTATAGGAATGGATTTGGCTTTGAAGGATGAGGAATCATGCTATTTATCAACTGCATTGTCATCAAAATTAGGGAGAATGGATTACACAAAGTCGACTAGAAAGTTTATGCGAAAGAATCAAGTGAAACCGTTTGAATTGATGCGTGATAATGGAAGTAGTGTTGAGAGTCCATGTCTTAGTGCCTCAACACATACACCTCAAGATGTTGATATTTTAGTTGATAACAATGGATGTGGAATAAGCTGTTGTTGGTCGAAATCACCGAGGTTTAAAGACTCAAATTATTATTCTGAAATGGAAGACCTTCCGTTGATGTTGCAGCACGTTAATGAGACGGATCTTCTTGGACATAAAAGTATGAGACACATTGGTGGTGAGATTAGTCCAACATTGGAAACTCCTAGAAGTTTGTCTATGAAATTTAAGCCAAAATCTTTTGATGATTTAGTTGGACAAAATGTGGTTGGAAAGTCTCTTTTGGGTGCCATCTATAGAGGAAGGATAGCATCATTTTATCTCTTCCATGGTCCTCGTGGCACGGGAAAGACATCTGCATCAAGGATATTTGCTGCTGCGCTGAATTGCCTCTCGTACGAGGAGAAAAAGCCGTGTGGTTGTTGTAGAGAATGTGTTTTGTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTTGACTCTTTGAGAATTAACCGTTCGGACAAAGCTAAATCTCTTGTTAAGAATGCATGCTCCACAAATCCAGTGTCGTCGCGTTTTAAGGTGTTCATTATTGATGAGTGCCAGTTATTGAATAAGGAAACATGGGTGATTCTTTTGAATAGCCTAGGGAGTGTTTCTCAACATGTGGTTTTTGTGATGATTACTCCTGATTTGGATAAGCTTCCACGAAGTGCGGTGTCTCGAGCTCAGAAATATCACTTTACAAAGATTAAAGATGCCGACATTGCAAACAGATTGAAAAGAATTTGTGCTGAGGAGGGTCTTGAATCTGAACAAGATGCTTTGGACTTTATTTCTGCTAAATCATGTGGTTCTCTTAGGGATGCAGAAATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAATCACAATTTCCTTAGTCTATGAACTTACTGGAGTAATTTCTGATGATGAACTGCTTGATTTGCTGGACCTCTCTTTGTCATCCGACACTTCAAATACGGTTATAAGAGCTCGAGAGCTGTTGAGATCAAGGATAGATCCTTTACAGCTTATATCTCAGCTGGCGAATCTTATTATGGATATTCTTGCAGGGAAATGTGAACTTAGTGGTTCTGAAATTAGACGAAGATTTTCTGATAAACATATTTCGGAAGCAAGCATGCATAAACTTAGTCATGCATTAAGAATACTTTCCGAAACGGAGAAGCAATTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCACTTCTACAGTTAAGCTCTATAGAATATTCATCTGTTGATGCTAATGATACCAAGTTTTGTTTGAGAGCTGCATCCAATAGAGATGGTGATTTATGCAGTACATCATCTACAGGTGAAACTTTGAAGCATCTCGCCCTCGCCACAGGTAAGTGTGATGAGAAGTCATATAAAATAGAGGTTCCGGAGGATGACAAAGCGACATTGGATTCTATATGGTATAAAGCTACTGAGATATGTCAATCTAGAAGACTCAAGGCTTTTCTCAGGAAGCAAGGGAAGTTGTCTTCAGTTTGTATTAATCAAGGTCTAGCTGTTGTGGAGTTGGAGTTTAACCATCGTGTTTACGTAGCTAGAGCTGAAAAATCATGGAAAGAAATTGCAAGTTCCCTACAGTTCATATTGGGCTGTAACATTGAGCTCAGAATCAATCACATACCATGTACTTCGGATTCAAAGTATGCTAAATTGAAGAGGTCATCGTTCAATTTCTTTAATTGTTCGCGCAGAATTCTTCGGAAATCACTATCATCCGATGAACAAGGATGTGAATCAGACTATGCTGATTGCACTTCTCAAAAGCCTATGATGATGGACCGAACTCTATCTCGCTCCTCTGATTGTGGCTCTCGTGCGCCGCCTCTTGAGTCCTACAATGGAATGGAAATTGTAACAACTCTTAGAAGCTGTGAAGGGAATTTACTAAGTTCCGGAAAGATATTTCTGAATAAGATAGATCAAGAGACTCCGAGGATTTCCTTTTCTAGAAATGATACTGTCAAGGAAGAAGGGTGCAATCATGAAGATCTCGCTTCATCAACTTTTGATTTAGATAATAATCGTTCTAACTGTTTTCCTCAAACGCTTTGGCTTCGTAGAAAATTCACATCTTCATATGCGTCAAAACAAAAAGAATTTTGTTTTACCAATCCCCAAGTACAAATGTACTGA 2760 0.3786 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISNLSPLIDNEHWEKNGISLRFLNATYACDSDDNGYLRSNDLDFKGHREHGTTTNTTNFEKNCYCEEHQQDDDFKGICGNKSPKESCCSNHEAIGMDLALKDEESCYLSTALSSKLGRMDYTKSTRKFMRKNQVKPFELMRDNGSSVESPCLSASTHTPQDVDILVDNNGCGISCCWSKSPRFKDSNYYSEMEDLPLMLQHVNETDLLGHKSMRHIGGEISPTLETPRSLSMKFKPKSFDDLVGQNVVGKSLLGAIYRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSYEEKKPCGCCRECVLFFSGRSKDVKEVDSLRINRSDKAKSLVKNACSTNPVSSRFKVFIIDECQLLNKETWVILLNSLGSVSQHVVFVMITPDLDKLPRSAVSRAQKYHFTKIKDADIANRLKRICAEEGLESEQDALDFISAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTGVISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCELSGSEIRRRFSDKHISEASMHKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSIEYSSVDANDTKFCLRAASNRDGDLCSTSSTGETLKHLALATGKCDEKSYKIEVPEDDKATLDSIWYKATEICQSRRLKAFLRKQGKLSSVCINQGLAVVELEFNHRVYVARAEKSWKEIASSLQFILGCNIELRINHIPCTSDSKYAKLKRSSFNFFNCSRRILRKSLSSDEQGCESDYADCTSQKPMMMDRTLSRSSDCGSRAPPLESYNGMEIVTTLRSCEGNLLSSGKIFLNKIDQETPRISFSRNDTVKEEGCNHEDLASSTFDLDNNRSNCFPQTLWLRRKFTSSYASKQKEFCFTNPQVQMY 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02996 919 NCBIfam DNA polymerase III subunit gamma/tau 261 608 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Trre15g02996 919 CDD AAA 275 426 - -
Trre15g02996 919 Gene3D - 436 497 - -
Trre15g02996 919 Pfam DNA polymerase III, delta subunit 277 435 - -
Trre15g02996 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 485 IPR027417 -
Trre15g02996 919 Gene3D - 498 612 - -
Trre15g02996 919 FunFam Protein STICHEL-like 1 isoform C 499 612 - -
Trre15g02996 919 Gene3D - 255 433 IPR027417 -
Trre15g02996 919 CDD HLD_clamp_pol_III_gamma_tau 435 498 IPR045085 -
Trre15g02996 919 FunFam DNA polymerase III subunit gamma/tau 436 498 - -
Trre15g02996 919 SUPERFAMILY post-AAA+ oligomerization domain-like 505 606 IPR008921 GO:0003677|GO:0006260
Trre15g02996 919 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 262 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02996 Trre-Chr15 26952869 26957305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02996 252 500 Core DNA Replication Machinery Family AT1G21690 25.397 7.14e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02996 - - gmx:100819111 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02996 15 26952869 26957305 Trre15g02996 15 26952869 26957305 ECH
Trre15g02996 15 26952869 26957305 Trre5g02810 5 22382825 22386036 PCT