Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02986 ATGAGGGTAATATGGTCATTCTCCACAGGATCACCGATCTATAGTTCGTATCAAGCTCCTATCAATAAGGACAGTGGTAAAAAAAATACATCTTCAGCACCAACCAGCGGGTTCGTAAAGTGTGGGGATGATTGGTCTTTGTACATGAACGACAAGATCCTCGGTAAAATGAGATTGTCAGAATCCATTCAAGAATTTGTACTTCGTGAACCTATCATTTCAGATGACGGAACTGCTATATTTGGATACAAAGAAGACAGTCTGTTCGAAGTTGACGCTAAAACTAGGTCGATCATTCAAATTCACGCCAAACCTGATCCTGGTAATGCTTCTGCACCTTTGAGAGATGACAAGCTGAGCGCTAAAAATATCATTAGTGCAGATAACAAGGATGTTGCTTATCCTGAGAAGCTAAATTCATCACAGCCACTGCTCATGCTTTTTAGGAAAGATTATACTCTGAAGTCTGTTAACACCAGCTCGAAAATAGTATTGTGGAATTTGACAGTAACTGAATTTGTAGCTGTATTATTATGCCAACGTACTACAGTTGATGTAGAGGATGAAATTCCTTCTGAAAGTGGCTTCAATTTTGTGATGCCTTACCCATGTCAAGAGATGCAAAACGTCTTTCGCCTGAAAAAGAGTTTTCTGTTAAAATCTTTAATCACTGAAAGTTTAATTGGGCCTTTTCATGAAAATGATATACTCTCAACGACTGCCTCGCATTGGATGATTCCATTGCAACCCAGTGTTGATAGATTTTTGATGGTCATGATGGCTCATAAACTTCCTCTGCCTCTCATTGAGATTACTTCACCAAGTGATGTTTATTTGAACAAGAGTGGATGGTCAACTCCATTACATCGTATATTGTTTACGGTCTTTCTTCTGGTGTTAGGATTTTCACTCATCTGCTTTCTTCTGGTGAAGGTGATTAAGAATCAAGATACACCAAAGGACCAAAACAGAGAGTATGAATTGAAAAGTTCACCTGCTAAGAGAAATAAAACGCACAAGTCAGGAAAGAATGGTGACACTATTGATAAAAGGGAAAACCATCTTTCTTCAGAAGATGAAGATGCACTGACACGAAAAGATACTAATAGAGAAGAATGGCAGAAATTTAATCAAGTTGATGAAGGTTTTGATGGACGGAAAATTGGTAAATTATTCGTTTCAAATAAAGAGATTGCTAAGGGAAGCAATGGTACAATTGTCCTTGGCGGAAGATATGAAGGTCGACCAGTTGCAGTTAAGCGTCTTGTCAAAGCTCATCACAAGGTAGCCTATAAAAAAATCCGAAACCTCATTGTGTCTGACCGTCATCCAAACATTGTCCGATGGCATGGGGTGGGGTATGATCAAGATTTTATTTACCTAGCACTGGAACGTTGTACTTGCAACTTGGATGATTTGATAAAGGGCCAAATGGAGACAGGGAAGGATAGTACACAGTATCTGTGGAAAGAAAATGGCTATCCATCAGCTCTATTGCTGAAATTGATGAGGGATATTGTTTCCGGGGTTGTTCATTTGCATGATCTAGGAATAATACATCGAGATTTGAAACCCCAAAATGTTCTAATAAACAATGAAAGATCCTTATGTGCAAAACTTTCTGACATGGGCATTAGCAAACTTCTTGAAAATATGTCCTCTTTGGGTCATAATGCTACTGGTATGAACTTCTCAGAAGAATTAAAATTTATCACCATTTCCTTGTCTTATAATTGA 1737 0.3823 MRVIWSFSTGSPIYSSYQAPINKDSGKKNTSSAPTSGFVKCGDDWSLYMNDKILGKMRLSESIQEFVLREPIISDDGTAIFGYKEDSLFEVDAKTRSIIQIHAKPDPGNASAPLRDDKLSAKNIISADNKDVAYPEKLNSSQPLLMLFRKDYTLKSVNTSSKIVLWNLTVTEFVAVLLCQRTTVDVEDEIPSESGFNFVMPYPCQEMQNVFRLKKSFLLKSLITESLIGPFHENDILSTTASHWMIPLQPSVDRFLMVMMAHKLPLPLIEITSPSDVYLNKSGWSTPLHRILFTVFLLVLGFSLICFLLVKVIKNQDTPKDQNREYELKSSPAKRNKTHKSGKNGDTIDKRENHLSSEDEDALTRKDTNREEWQKFNQVDEGFDGRKIGKLFVSNKEIAKGSNGTIVLGGRYEGRPVAVKRLVKAHHKVAYKKIRNLIVSDRHPNIVRWHGVGYDQDFIYLALERCTCNLDDLIKGQMETGKDSTQYLWKENGYPSALLLKLMRDIVSGVVHLHDLGIIHRDLKPQNVLINNERSLCAKLSDMGISKLLENMSSLGHNATGMNFSEELKFITISLSYN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02986 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 518 530 IPR008271 GO:0004672|GO:0006468
Trre15g02986 578 SUPERFAMILY Protein kinase-like (PK-like) 381 554 IPR011009 -
Trre15g02986 578 SMART serkin_6 392 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02986 578 ProSiteProfiles Protein kinase domain profile. 392 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02986 578 MobiDBLite consensus disorder prediction 320 366 - -
Trre15g02986 578 PANTHER IRE1-RELATED 57 562 IPR045133 GO:0004521|GO:0004674|GO:0030968
Trre15g02986 578 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 384 464 - -
Trre15g02986 578 Pfam Protein kinase domain 394 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02986 578 Gene3D Transferase(Phosphotransferase) domain 1 366 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02986 Trre-Chr15 26870885 26874197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02986 392 554 MAP Kinase Kinase Kinase AT1G14000 33.529 4.86e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Trre15g02986 Pkinase 3.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02986 K08852 - gmx:100785904 699.893