Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02974 ATGAATATTAATGGCTTCACCACTAACTTCCTCCATCTTCAACACAAACACAATCCCATTTCACTCAATTACCAATATCTCACTTCCATAAAAACCCTATCACCTCATATCACATGTCTCGCTGTCCACCATAACCTTCTCTATGCCGCTTCTCTCAACCTCATCAATGTTTTCGACCTCTCTTCCTCTCATTACACACACATCGACACCTTCAACGAAAACTCCGGTTCAGGTTTTGTCAAGTCCATCACCTTCAACGGTTCAAAAGTGTTCACTGCACACCAAGACTGTAAAATTCGCGTATGGCTTATCACATCTTCAAAACAACACCGTCTTATCTCCTCCCTTCCAACTGTCAAAGATCGGTTGCGCCGCGGCATCGTTCCTAAAAACTACGTCAACGTTCGACGTCACCGGAAGAGTCTTTGGATCCAACATAATGATACTGTGTCAGGTTTAGCAGTAAACCAGAAAGAGAAACTCATGTACTCTGTTTCATGGGACAAAACCATAGTCACACGGTTCGCAATTCGTTTCGTTGTTGTTTCCAATAACGGCGCCATTTACACGGCGTCAGCTGATGGGTGTATCAAGGTTTGGAAGATGGATGATCAGGTGAAACGCTACATGTTGGTGAGTACGGTGGGGAAGCAGAAACCAGCCGTTAATGCGTTGGCATTGAACAGAAATGGTACGGTTTTGTTTTCCGGTGGGAGTGATGGTACGATTTGTTTGTGGGAGGAAAAAGAAAACGAAAACGACGTCGTGTTGATGGAAACGTTGAGGGGTCATAGTGGGGCAATACTTTGTTTGGTCAACGTTGATGATTTGTTGATGAGTGGGTCAGCAGATCTGACGGTGAGGATTTGGCAGAGGGAAAAGGGGAATGGTGGGTATTATTGTAGAGGAGTATTGGAAGGACATGAAAAACCGGTTAAGTCGTTGGTGGCGGTTTCCGGTAGTAGTCGTGGTGGTGAAGATGATGATGAATCTGATGGTGATGGGGTTTTGACACTGTTTAGTGGAAGCCTTGATGGGGATATTAAAGTGTGGGAAGTGTTTGGTTTGGTTTAA 1074 0.446 MNINGFTTNFLHLQHKHNPISLNYQYLTSIKTLSPHITCLAVHHNLLYAASLNLINVFDLSSSHYTHIDTFNENSGSGFVKSITFNGSKVFTAHQDCKIRVWLITSSKQHRLISSLPTVKDRLRRGIVPKNYVNVRRHRKSLWIQHNDTVSGLAVNQKEKLMYSVSWDKTIVTRFAIRFVVVSNNGAIYTASADGCIKVWKMDDQVKRYMLVSTVGKQKPAVNALALNRNGTVLFSGGSDGTICLWEEKENENDVVLMETLRGHSGAILCLVNVDDLLMSGSADLTVRIWQREKGNGGYYCRGVLEGHEKPVKSLVAVSGSSRGGEDDDESDGDGVLTLFSGSLDGDIKVWEVFGLV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02974 357 ProSitePatterns Trp-Asp (WD) repeats signature. 339 353 IPR019775 -
Trre15g02974 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 247 - -
Trre15g02974 357 SMART WD40_4 254 291 IPR001680 GO:0005515
Trre15g02974 357 SMART WD40_4 64 103 IPR001680 GO:0005515
Trre15g02974 357 SMART WD40_4 298 352 IPR001680 GO:0005515
Trre15g02974 357 SMART WD40_4 23 59 IPR001680 GO:0005515
Trre15g02974 357 SMART WD40_4 164 201 IPR001680 GO:0005515
Trre15g02974 357 SMART WD40_4 208 247 IPR001680 GO:0005515
Trre15g02974 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 291 IPR001680 GO:0005515
Trre15g02974 357 SUPERFAMILY WD40 repeat-like 23 351 IPR036322 GO:0005515
Trre15g02974 357 Gene3D - 175 355 IPR015943 GO:0005515
Trre15g02974 357 Pfam WD domain, G-beta repeat 219 246 IPR001680 GO:0005515
Trre15g02974 357 Pfam WD domain, G-beta repeat 259 290 IPR001680 GO:0005515
Trre15g02974 357 Pfam WD domain, G-beta repeat 301 351 IPR001680 GO:0005515
Trre15g02974 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 291 - -
Trre15g02974 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Trre15g02974 357 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 16 353 IPR045182 -
Trre15g02974 357 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Trre15g02974 357 PRINTS G protein beta WD-40 repeat signature 188 202 IPR020472 -
Trre15g02974 357 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Trre15g02974 357 Gene3D - 2 174 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02974 Trre-Chr15 26639736 26641840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02974 219 315 U-box Gene Family AT2G33340 32.323 1.76e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02974 - - aprc:113874855 467.618