Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02970 ATGGCAACAGAATCATGGTTACTACTCTCGCAACCTTCTTCACTCTTGTACACCAAAACCAAATTCCCAATTATCTCAAATTATGTTAAGCCCTTCAAGCTACAAAACCCATCATCGTCGTCATCATCATGTAATAATAATACCTCAACTCTCCGTCTCACTACTAGAAGGAGAATAACCCGCCATTCTTCTGTTCTAACATTTGCGATTGGTGCAGTTGGAAATTCTTCTCAAGATTTGAAGATTTTTGTTGGAAATTTAACTGCTGATATTAATGTTGACAAATTAACCGCGCTTTTTGGGCAGGCTGGGACTGTAGTGCATGCTGAGGTAATTTATACTTGGGATCAAGACCAAAGGTTCGGATGTATAACCATGAGTACCGTTGAAGAAGTTGAGAAGGCTGTGAACAAGTTCGACGGATATGAATTAAATGGAAAATTGTTGACGGTTAGTACTACGGATGATCCAAGAAAAGCACAACCTGATCTTCCATCACGTCCACACGCGTTTGATTCTCCTTTTAGTCTCTACGTTCATAGCTTGACGCGGGATATTGACAATGCTCGCTTGGAGGAAATTTTCAGCAAATATGGTAAGGTTGAGAGTGTTGAGATAGTCTGCGATAAAGTGACCGGTAAAACACGTGGTTTTGGCTTTGTTACAATGTCAAATGAGACTGATATGAAAAATGCCATTGCTGGTCTTCATAAGAAGATGGACATGGGAGACAGAAAATTGAATGTTTATGAATTACCGCGTAACTTGTAA 771 0.3969 MATESWLLLSQPSSLLYTKTKFPIISNYVKPFKLQNPSSSSSSCNNNTSTLRLTTRRRITRHSSVLTFAIGAVGNSSQDLKIFVGNLTADINVDKLTALFGQAGTVVHAEVIYTWDQDQRFGCITMSTVEEVEKAVNKFDGYELNGKLLTVSTTDDPRKAQPDLPSRPHAFDSPFSLYVHSLTRDIDNARLEEIFSKYGKVESVEIVCDKVTGKTRGFGFVTMSNETDMKNAIAGLHKKMDMGDRKLNVYELPRNL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02970 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 243 IPR000504 GO:0003723
Trre15g02970 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 149 IPR000504 GO:0003723
Trre15g02970 256 Gene3D - 72 158 IPR012677 -
Trre15g02970 256 PANTHER OS02G0815200 PROTEIN 52 249 - -
Trre15g02970 256 SUPERFAMILY RNA-binding domain, RBD 161 249 IPR035979 GO:0003676
Trre15g02970 256 SUPERFAMILY RNA-binding domain, RBD 76 172 IPR035979 GO:0003676
Trre15g02970 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 156 IPR000504 GO:0003723
Trre15g02970 256 Gene3D - 159 254 IPR012677 -
Trre15g02970 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 254 IPR000504 GO:0003723
Trre15g02970 256 SMART rrm1_1 176 250 IPR000504 GO:0003723
Trre15g02970 256 SMART rrm1_1 81 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02970 Trre-Chr15 26524523 26526090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02970 82 249 Eukaryotic Initiation Factors Gene Family AT1G22760 24.852 1.89e-07 49.7