Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g02969 | ATGTTCCTTTCTTCTACTTCTTCTCTCAACATTCATTCACCTACAATGTCTATCACAATGGCAACAGAATCATGGTTACTACTCTCGCAACCTTCTTCACTCTTGTACACCAAAACCAAATTCCCAATTATCTCAAATTATGTTAAGCCCTTCAAGCTACAAAACCCATCATCGTCGTCATCATCATGTAATAATAATACCTCAACTCTCCGTCTCACTACTAGAAGGAGAATAACCCGCCATTCTTCTGTTCTAACATTTGCGATTGGTGCAGTTGGAAATTCTTCTCAAGATTTGAAGATTTTTGTTGGAAATTTAACTGCTGATATTAATGTTGACAAATTAACCGCGCTTTTTGGGCAGGCTGGGACTGTAGTGCATGCTGAGGTAATTTATACTTGGGATCAAGACCAAAGGTTCGGATGTATAACCATGAGTACCGTTGAAGAAGTTGAGAAGGCTGTGAACAAGTTCGACGGATATGAATTAAATGGAAAATTGTTGACGGTTAGTACTACGGATGATCCAAGAAAAGCACAACCTGATCTTCCATCACGTCCACACGCGTTTGATTCTCCTTTTAGTCTCTACGTTCATAGCTTGACGCGGGATATTGACAATGCTCGCTTGGAGGAAATTTTCAGCAAATATGGTAAGGTTGAGAGTGTTGAGATAGTCTGCGATAAAGTGACCGGTAAAACACGTGGTTTTGGCTTTGTTACAATGTCAAATGAGACTGATATGAAAAATGCCATTGCTGGTCTTCATAAGAAGATGGACATGGGAGACAGAAAATTGAATGTTTATGAATTACCGCGTAACTTGTAA | 828 | 0.3937 | MFLSSTSSLNIHSPTMSITMATESWLLLSQPSSLLYTKTKFPIISNYVKPFKLQNPSSSSSSCNNNTSTLRLTTRRRITRHSSVLTFAIGAVGNSSQDLKIFVGNLTADINVDKLTALFGQAGTVVHAEVIYTWDQDQRFGCITMSTVEEVEKAVNKFDGYELNGKLLTVSTTDDPRKAQPDLPSRPHAFDSPFSLYVHSLTRDIDNARLEEIFSKYGKVESVEIVCDKVTGKTRGFGFVTMSNETDMKNAIAGLHKKMDMGDRKLNVYELPRNL | 275 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g02969 | 275 | Gene3D | - | 178 | 273 | IPR012677 | - | |
Trre15g02969 | 275 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 99 | 175 | IPR000504 | GO:0003723 | |
Trre15g02969 | 275 | SMART | rrm1_1 | 100 | 171 | IPR000504 | GO:0003723 | |
Trre15g02969 | 275 | SMART | rrm1_1 | 195 | 269 | IPR000504 | GO:0003723 | |
Trre15g02969 | 275 | Gene3D | - | 91 | 177 | IPR012677 | - | |
Trre15g02969 | 275 | PANTHER | OS02G0815200 PROTEIN | 71 | 268 | - | - | |
Trre15g02969 | 275 | SUPERFAMILY | RNA-binding domain, RBD | 99 | 262 | IPR035979 | GO:0003676 | |
Trre15g02969 | 275 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 194 | 273 | IPR000504 | GO:0003723 | |
Trre15g02969 | 275 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 101 | 168 | IPR000504 | GO:0003723 | |
Trre15g02969 | 275 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 196 | 262 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g02969 | Trre-Chr15 | 26524466 | 26526090 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g02969 | 101 | 268 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 24.852 | 2.09e-07 | 50.1 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre15g02969 | 15 | 26524466 | 26526090 | Trre5g02790 | 5 | 22229709 | 22231970 | ECH | |
Trre15g02969 | 15 | 26524466 | 26526090 | Trre15g02969 | 15 | 26524466 | 26526090 | ECH | |
Trre15g02969 | 15 | 26524466 | 26526090 | Trre5g02790 | 5 | 22229709 | 22231970 | PCT |