Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02969 ATGTTCCTTTCTTCTACTTCTTCTCTCAACATTCATTCACCTACAATGTCTATCACAATGGCAACAGAATCATGGTTACTACTCTCGCAACCTTCTTCACTCTTGTACACCAAAACCAAATTCCCAATTATCTCAAATTATGTTAAGCCCTTCAAGCTACAAAACCCATCATCGTCGTCATCATCATGTAATAATAATACCTCAACTCTCCGTCTCACTACTAGAAGGAGAATAACCCGCCATTCTTCTGTTCTAACATTTGCGATTGGTGCAGTTGGAAATTCTTCTCAAGATTTGAAGATTTTTGTTGGAAATTTAACTGCTGATATTAATGTTGACAAATTAACCGCGCTTTTTGGGCAGGCTGGGACTGTAGTGCATGCTGAGGTAATTTATACTTGGGATCAAGACCAAAGGTTCGGATGTATAACCATGAGTACCGTTGAAGAAGTTGAGAAGGCTGTGAACAAGTTCGACGGATATGAATTAAATGGAAAATTGTTGACGGTTAGTACTACGGATGATCCAAGAAAAGCACAACCTGATCTTCCATCACGTCCACACGCGTTTGATTCTCCTTTTAGTCTCTACGTTCATAGCTTGACGCGGGATATTGACAATGCTCGCTTGGAGGAAATTTTCAGCAAATATGGTAAGGTTGAGAGTGTTGAGATAGTCTGCGATAAAGTGACCGGTAAAACACGTGGTTTTGGCTTTGTTACAATGTCAAATGAGACTGATATGAAAAATGCCATTGCTGGTCTTCATAAGAAGATGGACATGGGAGACAGAAAATTGAATGTTTATGAATTACCGCGTAACTTGTAA 828 0.3937 MFLSSTSSLNIHSPTMSITMATESWLLLSQPSSLLYTKTKFPIISNYVKPFKLQNPSSSSSSCNNNTSTLRLTTRRRITRHSSVLTFAIGAVGNSSQDLKIFVGNLTADINVDKLTALFGQAGTVVHAEVIYTWDQDQRFGCITMSTVEEVEKAVNKFDGYELNGKLLTVSTTDDPRKAQPDLPSRPHAFDSPFSLYVHSLTRDIDNARLEEIFSKYGKVESVEIVCDKVTGKTRGFGFVTMSNETDMKNAIAGLHKKMDMGDRKLNVYELPRNL 275
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02969 275 Gene3D - 178 273 IPR012677 -
Trre15g02969 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 175 IPR000504 GO:0003723
Trre15g02969 275 SMART rrm1_1 100 171 IPR000504 GO:0003723
Trre15g02969 275 SMART rrm1_1 195 269 IPR000504 GO:0003723
Trre15g02969 275 Gene3D - 91 177 IPR012677 -
Trre15g02969 275 PANTHER OS02G0815200 PROTEIN 71 268 - -
Trre15g02969 275 SUPERFAMILY RNA-binding domain, RBD 99 262 IPR035979 GO:0003676
Trre15g02969 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 273 IPR000504 GO:0003723
Trre15g02969 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 168 IPR000504 GO:0003723
Trre15g02969 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 262 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre15g02969 Trre-Chr15 26524466 26526090 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02969 101 268 Eukaryotic Initiation Factors Gene Family AT1G22760 24.852 2.09e-07 50.1
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02969 15 26524466 26526090 Trre5g02790 5 22229709 22231970 ECH
Trre15g02969 15 26524466 26526090 Trre15g02969 15 26524466 26526090 ECH
Trre15g02969 15 26524466 26526090 Trre5g02790 5 22229709 22231970 PCT