Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02968 ATGTCTATCACTTCCTTCAAATCTCTTACAATGGCTGAATCTTGCTTACTCTCTCAACCTTCACTCTTCCACACCAAAACCAAATCCTCATTCATCTCTAACTCTGCTAAGTCCTTCAAGATACAAAACCCATCCTACAATTCTTCAAAGTTTTCACAATCTATTTCTCTTACTATCAGTAACAGAAGAACACGTGATTCTTCTTTTGTCACATTTGTTGCACAGACATCTGATTGGACTCAGGAAGAGAAAGAAGATGGAGCATGGGAGAATCAAGGTGAAACTGCTTGGGTTGGTGAAACTGAAACAGCTGAGAGTGATGGTGATGTTGGTAGATTTGAAGAACCTTCTGAAGAGTTGAAGATTTTTGTTGGGAATTTGCCTTTTGATGTTGATAGTGAGAAATTGGCTGAACTTTTTGAGCAGGCTGGGACTGTTGAAGTTGCTGAGGTAATTTATAACAGGGAGACTGACCGTAGTCGTGGGTTTGGATTTGTAACAATGAGTACAGCTGAAGAAGTTGAGAGGGCTGTGAACAAGTTCAGTCGCTATGAATTAGATGGAAGATTGTTGACTGTTAATAAGGCCGCTCCAAGAGGATCACCACGGCCTGAGCGTCCACCACGTGCTTTTAATTCTGGTTCTGGTTTAAGAGTCTATGTTGGTAACTTGCCATGGGATGTTGACAATTCTAGCTTGGAACAACTTTTCAGCGAACATGGTAAGGTTGAGGATGCTCGGGTAGTCATTGACAGAGAGACTGGTCGGTCACGTGGTTTTGGCTTTGTTACAATGGCGAGCGAGGATGATGTGAATAAAGCAATTGCTGCTCTTGACGGTCAGAGCATGAACGGGAGGGCAATTAGAGTGAATGTTGCCGAGGAAAGACCCAGGCGCAATTTCTGA 906 0.4294 MSITSFKSLTMAESCLLSQPSLFHTKTKSSFISNSAKSFKIQNPSYNSSKFSQSISLTISNRRTRDSSFVTFVAQTSDWTQEEKEDGAWENQGETAWVGETETAESDGDVGRFEEPSEELKIFVGNLPFDVDSEKLAELFEQAGTVEVAEVIYNRETDRSRGFGFVTMSTAEEVERAVNKFSRYELDGRLLTVNKAAPRGSPRPERPPRAFNSGSGLRVYVGNLPWDVDNSSLEQLFSEHGKVEDARVVIDRETGRSRGFGFVTMASEDDVNKAIAALDGQSMNGRAIRVNVAEERPRRNF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02968 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Trre15g02968 301 FunFam 31 kDa ribonucleoprotein, chloroplastic 205 301 - -
Trre15g02968 301 SUPERFAMILY RNA-binding domain, RBD 213 299 IPR035979 GO:0003676
Trre15g02968 301 SUPERFAMILY RNA-binding domain, RBD 116 214 IPR035979 GO:0003676
Trre15g02968 301 PANTHER OS02G0815200 PROTEIN 10 298 - -
Trre15g02968 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Trre15g02968 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 289 IPR000504 GO:0003723
Trre15g02968 301 SMART rrm1_1 121 194 IPR000504 GO:0003723
Trre15g02968 301 SMART rrm1_1 218 291 IPR000504 GO:0003723
Trre15g02968 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Trre15g02968 301 Gene3D - 202 300 IPR012677 -
Trre15g02968 301 Gene3D - 60 201 IPR012677 -
Trre15g02968 301 CDD RRM2_NsCP33_like 218 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02968 Trre-Chr15 26517222 26519266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02968 122 300 Eukaryotic Initiation Factors Gene Family AT4G34110 30.168 4.75e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02968 - - gmx:100804984 367.466