Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02962 ATGCTACTCATAATCTCTTCCATCTCTCTCATATTTTTTATGCTAATCAAATGGTATTCCAATTCTACAGAAACCAAAAACTCACCTCCAAAATTACCAATAATAGGAAATCTCCATCAAATTGGCTCATTCCCTCACCGCACATTTCAATCTTTAGCTAAAAAATATGGCCCTTTCATGCAACTCAATTTCGGTCGTGTACCGGTTCTTGTGATCTCATCGGCTGAAGCAGCCAATGAGATCATGAAAACCCATGATCATGTCTTTGCAAATAGACCCCCGAAAAAAAATTACGACATACTTTTATATAATTTTAGAGATGTTTCAACAGCTCCATATGGAGAGTATTGGAGGCAATTAAGGAGCATATGTGTGTTACATCTTCTTAGTGCCAAAAGAGTTCAATCTTTTCGTGAAGTGAGAGAGCAAGAAGTAGGTTTAATGATGGAGAAAATAAAGCACTATTCTTCCAATTCATTACCATTGAATTTAAGTGAATTAATAGCTAAAACTACTAATGATATAGTTTGTATGGTTACTTTGGGAAGAAAGTATAGTGGTGAAAGTTTAAAGGGATTTACAAAGTTAATGTTGGATTTTACAGAGTTACTTGGTGCTTTTGTTGTTGGGGACTATGTTCCTTGTCTTGATTGGATGTCCCATGCTTCTGGATATTATTCAAGAGCAAAAAAAGTTGCTAAACAATTTGATGATCTTTTGGAAGATGTTGTTGAAGATCATATCAAACGTCAGAGAGGAACTAGTGAAGATTTTGGTGACTTTGTTGATGTTTTGCTTTGGATCCAAAATACAGAATCACTTGGCTTTCCTATTGATAAAATTGTTATAAAAGCTCTATTGTTGGACATGTTTATTGCAGGCACAGACACCATATCCACTTTGCTAGAGTGGGAAATGACAGAACTCTTAAGACATCCAAATATCATGAAGAAATTAACAGAAGAAGTTAGGAGAGTGGGTAATGGCAGAACACACATAATCGAAGACGATTTAAGTAACATGAAATACTTAAAGGCAGTGGGTAAAGAAACACTACGATTACATCCCCCAATTCCACTACTAGTCCCTCGAGAAAGTAGACAAGATATCAATCTAAACGGTTACCACATTAAAGCCGGAACACGAGTTTTTATCAATGCTTGGGGAATCGCAAGAGATCCTACATATTGGGATCAACCAGAAGAGTTCAAGCCTGAGAGATTTTTGAGTAACTCAATAGATACTGAAGGGAATAGTAATTTCCAATTGATGATTCCATTTGGAGCTGGAAGAAGAGGTTGCCCTGGGGCAGTGTATGCTATGGCTGCCAATGACCTTATGTTGGCAAACCTTATACATCAGTTTGACTGGGAATTACCTGGTGGTGCTGTAGGATTGGAGAAATTAGACATGTTTGAATCATTTGGATTTACCGTGCATAGAAAAAATCCCCTTATGGCACTTGCAAGAAGTAAATGA 1479 0.3685 MLLIISSISLIFFMLIKWYSNSTETKNSPPKLPIIGNLHQIGSFPHRTFQSLAKKYGPFMQLNFGRVPVLVISSAEAANEIMKTHDHVFANRPPKKNYDILLYNFRDVSTAPYGEYWRQLRSICVLHLLSAKRVQSFREVREQEVGLMMEKIKHYSSNSLPLNLSELIAKTTNDIVCMVTLGRKYSGESLKGFTKLMLDFTELLGAFVVGDYVPCLDWMSHASGYYSRAKKVAKQFDDLLEDVVEDHIKRQRGTSEDFGDFVDVLLWIQNTESLGFPIDKIVIKALLLDMFIAGTDTISTLLEWEMTELLRHPNIMKKLTEEVRRVGNGRTHIIEDDLSNMKYLKAVGKETLRLHPPIPLLVPRESRQDINLNGYHIKAGTRVFINAWGIARDPTYWDQPEEFKPERFLSNSIDTEGNSNFQLMIPFGAGRRGCPGAVYAMAANDLMLANLIHQFDWELPGGAVGLEKLDMFESFGFTVHRKNPLMALARSK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02962 492 Pfam Cytochrome P450 29 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 Gene3D Cytochrome P450 20 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 SUPERFAMILY Cytochrome P450 29 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 CDD CYP71-like 55 485 - -
Trre15g02962 492 PRINTS E-class P450 group I signature 171 189 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 PRINTS E-class P450 group I signature 386 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 PRINTS E-class P450 group I signature 345 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 PRINTS E-class P450 group I signature 77 98 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 PRINTS E-class P450 group I signature 282 299 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 PRINTS E-class P450 group I signature 434 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 PRINTS E-class P450 group I signature 53 72 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 PRINTS E-class P450 group I signature 302 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 PRINTS E-class P450 group I signature 424 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 PANTHER CYTOCHROME P450 71B11-RELATED 16 489 - -
Trre15g02962 492 FunFam Cytochrome P450 83B1 13 488 - -
Trre15g02962 492 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 427 436 IPR017972 GO:0005506|GO:0016705
Trre15g02962 492 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 PRINTS P450 superfamily signature 293 310 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre15g02962 492 PRINTS P450 superfamily signature 425 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02962 Trre-Chr15 26435475 26437720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02962 1 489 Cytochrome P450 AT3G48280 50.810 4.89e-176 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02962 - - gmx:100819183 569.696