Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02958 ATGGAGATGGAACGCGTCTTTGAATTTCCTCATAATCACATGGATCGGCGTCCTAGAAAGAGAGCGAGATTGGGTTGGGATGTTCCTGAAACCCCTAAGGCTCAGGTAGGATTGTTTTTTGGACAAGAGCTTGGGAATATTTCAAGCTATGCTCCCTCAGAAAATATCACTAGTTCTGTAATTGTTAAGGGTGATGCTCGAAATGGTTCTCCCCCTTGGCGAAATGATGACAAAGATGGCCATTACATGTTTGCTGTTGGAGATAATTTAACTTCCCGCTATAAGATCCACAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTATTGGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTCCGTGGAATAAAGAAGTATCGAGAAGCAGCTATGATAGAAATTGAGATGTTGCAGCAGCTTGGTAAACATGATATGGGTGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATATGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCAATGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTATAGCATTTATGCATGATTTGCGCATGATCCACACTGACTTAAAGCCTGAAAACATACTCCTTGTTTCGTCAGACTATGTCAAAGTTCCTGACTACAAGATTTCATCTAGATCGCCAAACTCGTATTTCAAGAAAGTGCCTAAGTCTAGTGCTATCAAGGTTATTGATTTTGGTAGTACCACTTATGAGCGAGTAGATCAGAGTTACATTGTATCAACTCGTCATTATAGAGCACCTGAAGTTATACTTGGTCTTGGCTGGAGTCATCCATGTGATATATGGAGTGTGGGATGTATATTGGTTGAGTTATGCACGGGCGAAGCTTTGTTTCAGACTCATGAAAATTTAGAACACCTTGCCATGATGGAGAGGGTACTTGGTCCACTACCAATGCATATGTTGAAGAGAGTTGACCGGCATGCTGAGAAGTATGTTAGAAGAGGTAAACTAGACTGGCCAGTGGGTGCAACCTCGAGGGAGAGTATTAAAGCCGTGACAAAGCTCCCTAGACTCCAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGTGATCTCATTCATCTATTGCAAGGGTTACTTAGATATGACCCCTCCGAAAGAATAACAGCTAAGGAAGCCCTGAGACATTCCTTTTTTATGAGGAGATCATATTAG 1275 0.4165 MEMERVFEFPHNHMDRRPRKRARLGWDVPETPKAQVGLFFGQELGNISSYAPSENITSSVIVKGDARNGSPPWRNDDKDGHYMFAVGDNLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKHDMGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPNDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSSDYVKVPDYKISSRSPNSYFKKVPKSSAIKVIDFGSTTYERVDQSYIVSTRHYRAPEVILGLGWSHPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPMHMLKRVDRHAEKYVRRGKLDWPVGATSRESIKAVTKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERITAKEALRHSFFMRRSY 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02958 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Trre15g02958 424 Pfam Protein kinase domain 94 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02958 424 FunFam Serine/threonine-protein kinase AFC2 170 419 - -
Trre15g02958 424 SMART serkin_6 94 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02958 424 Gene3D Phosphorylase Kinase; domain 1 81 174 - -
Trre15g02958 424 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 421 - -
Trre15g02958 424 ProSiteProfiles Protein kinase domain profile. 94 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02958 424 CDD PKc_CLK 81 419 - -
Trre15g02958 424 SUPERFAMILY Protein kinase-like (PK-like) 81 420 IPR011009 -
Trre15g02958 424 FunFam Serine/threonine-protein kinase AFC2 81 174 - -
Trre15g02958 424 Gene3D Transferase(Phosphotransferase) domain 1 148 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02958 Trre-Chr15 26304094 26307524 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02958 99 419 Core Cell Cycle Gene Families AT1G76540 26.269 8.77e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Trre15g02958 Pkinase 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02958 K08287 - gmx:100804452 795.808