Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g02958 | ATGGAGATGGAACGCGTCTTTGAATTTCCTCATAATCACATGGATCGGCGTCCTAGAAAGAGAGCGAGATTGGGTTGGGATGTTCCTGAAACCCCTAAGGCTCAGGTAGGATTGTTTTTTGGACAAGAGCTTGGGAATATTTCAAGCTATGCTCCCTCAGAAAATATCACTAGTTCTGTAATTGTTAAGGGTGATGCTCGAAATGGTTCTCCCCCTTGGCGAAATGATGACAAAGATGGCCATTACATGTTTGCTGTTGGAGATAATTTAACTTCCCGCTATAAGATCCACAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTATTGGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTCCGTGGAATAAAGAAGTATCGAGAAGCAGCTATGATAGAAATTGAGATGTTGCAGCAGCTTGGTAAACATGATATGGGTGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATATGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCAATGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTATAGCATTTATGCATGATTTGCGCATGATCCACACTGACTTAAAGCCTGAAAACATACTCCTTGTTTCGTCAGACTATGTCAAAGTTCCTGACTACAAGATTTCATCTAGATCGCCAAACTCGTATTTCAAGAAAGTGCCTAAGTCTAGTGCTATCAAGGTTATTGATTTTGGTAGTACCACTTATGAGCGAGTAGATCAGAGTTACATTGTATCAACTCGTCATTATAGAGCACCTGAAGTTATACTTGGTCTTGGCTGGAGTCATCCATGTGATATATGGAGTGTGGGATGTATATTGGTTGAGTTATGCACGGGCGAAGCTTTGTTTCAGACTCATGAAAATTTAGAACACCTTGCCATGATGGAGAGGGTACTTGGTCCACTACCAATGCATATGTTGAAGAGAGTTGACCGGCATGCTGAGAAGTATGTTAGAAGAGGTAAACTAGACTGGCCAGTGGGTGCAACCTCGAGGGAGAGTATTAAAGCCGTGACAAAGCTCCCTAGACTCCAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGTGATCTCATTCATCTATTGCAAGGGTTACTTAGATATGACCCCTCCGAAAGAATAACAGCTAAGGAAGCCCTGAGACATTCCTTTTTTATGAGGAGATCATATTAG | 1275 | 0.4165 | MEMERVFEFPHNHMDRRPRKRARLGWDVPETPKAQVGLFFGQELGNISSYAPSENITSSVIVKGDARNGSPPWRNDDKDGHYMFAVGDNLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKHDMGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPNDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSSDYVKVPDYKISSRSPNSYFKKVPKSSAIKVIDFGSTTYERVDQSYIVSTRHYRAPEVILGLGWSHPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPMHMLKRVDRHAEKYVRRGKLDWPVGATSRESIKAVTKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERITAKEALRHSFFMRRSY | 424 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g02958 | 424 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 215 | 227 | IPR008271 | GO:0004672|GO:0006468 | |
Trre15g02958 | 424 | Pfam | Protein kinase domain | 94 | 419 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre15g02958 | 424 | FunFam | Serine/threonine-protein kinase AFC2 | 170 | 419 | - | - | |
Trre15g02958 | 424 | SMART | serkin_6 | 94 | 419 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre15g02958 | 424 | Gene3D | Phosphorylase Kinase; domain 1 | 81 | 174 | - | - | |
Trre15g02958 | 424 | PANTHER | SERINE/THREONINE-PROTEIN KINASE DOA-RELATED | 1 | 421 | - | - | |
Trre15g02958 | 424 | ProSiteProfiles | Protein kinase domain profile. | 94 | 419 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre15g02958 | 424 | CDD | PKc_CLK | 81 | 419 | - | - | |
Trre15g02958 | 424 | SUPERFAMILY | Protein kinase-like (PK-like) | 81 | 420 | IPR011009 | - | |
Trre15g02958 | 424 | FunFam | Serine/threonine-protein kinase AFC2 | 81 | 174 | - | - | |
Trre15g02958 | 424 | Gene3D | Transferase(Phosphotransferase) domain 1 | 148 | 419 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g02958 | Trre-Chr15 | 26304094 | 26307524 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g02958 | 99 | 419 | Core Cell Cycle Gene Families | AT1G76540 | 26.269 | 8.77e-26 | 104 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CMGC_CLK | Trre15g02958 | Pkinase | 2.8e-50 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g02958 | K08287 | - | gmx:100804452 | 795.808 |