Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02957 ATGGAGATGGAACGCGTCTTTGAATTTCCTCATAATCACATGGATCGGCGTCCTAGAAAGAGAGCGAGATTGGGTTGGGATGTTCCTGAAACCCCTAAGGCTCAGGTAGGATTGTTTTTTGGACAAGAGCTTGGGAATATTTCAAGCTATGCTCCCTCAGAAAATATCACTAGTTCTGTAATTGTTAAGGGTGATGCTCGAAATGGTTCTCCCCCTTGGCGAAATGATGACAAAGATGGCCATTACATGTTTGCTGTTGGAGATAATTTAACTTCCCGCTATAAGATCCACAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTATTGGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTCCGTGGAATAAAGAAGTATCGAGAAGCAGCTATGATAGAAATTGAGATGTTGCAGCAGCTTGGTAAACATGATATGGGTGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATATGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCAATGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATTTATGCATGATTTGCGCATGATCCACACTGACTTAAAGCCTGAAAACATACTCCTTGTTTCGTCAGACTATGTCAAAGTTCCTGACTACAAGATTTCATCTAGATCGCCAAACTCGTATTTCAAGAAAGTGCCTAAGTCTAGTGCTATCAAGGTTATTGATTTTGGTAGTACCACTTATGAGCGAGTAGATCAGAGTTACATTGTATCAACTCGTCATTATAGAGCACCTGAAGTTATACTTGGTCTTGGCTGGAGTCATCCATGTGATATATGGAGTGTGGGATGTATATTGGTTGAGTTATGCACGGGCGAAGCTTTGTTTCAGACTCATGAAAATTTAGAACACCTTGCCATGATGGAGAGGGTACTTGGTCCACTACCAATGCATATGTTGAAGAGAGTTGACCGGCATGCTGAGAAGTATGTTAGAAGAGGTAAACTAGACTGGCCAGTGGGTGCAACCTCGAGGGAGAGTATTAAAGCCGTGACAAAGCTCCCTAGACTCCAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGTGATCTCATTCATCTATTGCAAGGGTTACTTAGATATGACCCCTCCGAAAGAATAACAGCTAAGGAAGCCCTGAGACATTCCTTTTTTATGAGGAGATCATATTAG 1266 0.4171 MEMERVFEFPHNHMDRRPRKRARLGWDVPETPKAQVGLFFGQELGNISSYAPSENITSSVIVKGDARNGSPPWRNDDKDGHYMFAVGDNLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKHDMGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPNDLVREIGRQLLEFMHDLRMIHTDLKPENILLVSSDYVKVPDYKISSRSPNSYFKKVPKSSAIKVIDFGSTTYERVDQSYIVSTRHYRAPEVILGLGWSHPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPMHMLKRVDRHAEKYVRRGKLDWPVGATSRESIKAVTKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERITAKEALRHSFFMRRSY 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02957 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Trre15g02957 421 Pfam Protein kinase domain 94 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02957 421 SMART serkin_6 94 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02957 421 FunFam Serine/threonine-protein kinase AFC2 170 416 - -
Trre15g02957 421 Gene3D Phosphorylase Kinase; domain 1 81 174 - -
Trre15g02957 421 ProSiteProfiles Protein kinase domain profile. 94 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02957 421 CDD PKc_CLK 81 416 - -
Trre15g02957 421 Gene3D Transferase(Phosphotransferase) domain 1 148 416 - -
Trre15g02957 421 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 418 - -
Trre15g02957 421 SUPERFAMILY Protein kinase-like (PK-like) 81 417 IPR011009 -
Trre15g02957 421 FunFam Serine/threonine-protein kinase AFC2 81 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02957 Trre-Chr15 26304094 26307524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02957 92 416 MAP Kinase Gene Family AT5G19010 28.280 8.15e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Trre15g02957 Pkinase 4.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02957 K08287 - gmx:100804452 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02957 15 26304094 26307524 Trre15g02957 15 26304094 26307524 ECH