Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02923 ATGGAATCAAATCCCAAAATTACCATTAAATTCCTCTTTAGCTACGGTGGCAAAATCATTCCCCGCCTCACTGACGGCAAACTCCGATACTCCGGTGGCCACACCAGAGTCCTCGCACTCCCTCCCACCATTTCATTCTCAGGATTAATGATGAAGCTTATGGAATTGTGTGGTTCATCTTCAGTAACATTAAAATGTCCATTACCAAATGGAGATTTAGAGACATTGATTTCAATCACCAGCGATGTAGATCTAGCAAATATAATTGAAGAATACGACCGAGCTTCTTCATCATTAACTCATCCATTGAAGATCAGAGCCATTCTTTCACCACTCAAATCTCTGAAGAAATTATCTCCTCCTCCGTCTACTTCGTCCAGTGCAACTCACTCTCCGATTGGTTCGCTTCACACCTCCGCAGAATCACTGCCGTATGCAGCTGTGAATCGAAATAGCCGCCTGAATTGCTCGCCGGTTTCAGTTGGTTTTCCGATTGGTATTCGGAATCGAGTAAAAGGTAGTTGTTACAAAGGGCAATTAGATGGAAGTCCTAGATTTCTTTATCGCTTCTCTAATAATTATTGTCACTGA 591 0.4247 MESNPKITIKFLFSYGGKIIPRLTDGKLRYSGGHTRVLALPPTISFSGLMMKLMELCGSSSVTLKCPLPNGDLETLISITSDVDLANIIEEYDRASSSLTHPLKIRAILSPLKSLKKLSPPPSTSSSATHSPIGSLHTSAESLPYAAVNRNSRLNCSPVSVGFPIGIRNRVKGSCYKGQLDGSPRFLYRFSNNYCH 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02923 196 PANTHER OS05G0427100 PROTEIN-RELATED 5 153 - -
Trre15g02923 196 SMART PB1_new 23 112 IPR000270 GO:0005515
Trre15g02923 196 SUPERFAMILY CAD & PB1 domains 25 115 - -
Trre15g02923 196 CDD PB1_UP2 14 109 - -
Trre15g02923 196 Gene3D - 27 109 - -
Trre15g02923 196 Pfam PB1 domain 25 97 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02923 Trre-Chr15 25650818 25651646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02923 10 91 MAP Kinase Kinase Kinase AT2G35050 51.220 2.48e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02923 - - mtr:25493721 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02923 15 25650818 25651646 Trre15g02923 15 25650818 25651646 ECH
Trre15g02923 15 25650818 25651646 Trre5g02745 5 21929381 21930077 PCT