Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02917 ATGGAAAATAAGGATAGTAACCCAAAAGAAGCAAGGGATTATTATTCCAGATCAATATGGTGGTCAGAAACAGCTCAAGCATTTGAAGATCATAAAATATATGACACAAATAATGGAACTTATAGCTTTCAAGAAATTATGACTCCAGAAATTTCTGAAAAATTTGGAGAACTCAAAAGTTTAACAAGTAACAGAAACAGAGTTAATGAGATAGTACCGGATGACGGTAGCGAAGAAAACGGCGAATTTGTTGTTCCTTATTCTATACAAATATTGTCAACAGAAATTGTGGAAATTGTTGAGGATGGAAAGAGTATAACAATCAACAAAGATAGAAGAGTTGATGATCTTTATGTAGCTGTTGGAGAAGATGATTTAGATGTTGTGAAATGGGCTCTTGATCATGCTGTTTCTCCTGGTTCTAGGATTTTTCTTGTCCATGTTTCGCCTCCTATAACATTGATTCCTACACCAGTTGGGATGCTTGAAAGAAACCAACTGACCCCACAACAAGTAAGGCGTTACCTAAATGAAGTGAACAATAAGAGGAAAGATCTTTTGCAGAAATATATCCAGCTGAGTACTGAAGCAAAGGTAACTGCTGAAACATTGATTCTAGAGAGCAAGTTCAAAGGAAAAGCCATTTTGGATCTTATCTCTATTCTTAACATAACCAACCTTGTATTAGGAATCAAGAAGCTACCATGCAAACGGCGCAATGATAAATTGAGTGAAGGAGTATTGGTAAAGAAAAATGCACCAAAGACATGTGATGTTACATTGATTTACAATGGCGAGGTGTTTATGTCTGATGCTTTTGTGGATCAACAAATGCCATCATACTGTTTATTTTCGCGAAATAATGATTCAAAACGCAAATTCTTTCAGTGTATCTGCTTTTCAGGATGCGTGAGAGACGACAAGGATAACTGA 933 0.3591 MENKDSNPKEARDYYSRSIWWSETAQAFEDHKIYDTNNGTYSFQEIMTPEISEKFGELKSLTSNRNRVNEIVPDDGSEENGEFVVPYSIQILSTEIVEIVEDGKSITINKDRRVDDLYVAVGEDDLDVVKWALDHAVSPGSRIFLVHVSPPITLIPTPVGMLERNQLTPQQVRRYLNEVNNKRKDLLQKYIQLSTEAKVTAETLILESKFKGKAILDLISILNITNLVLGIKKLPCKRRNDKLSEGVLVKKNAPKTCDVTLIYNGEVFMSDAFVDQQMPSYCLFSRNNDSKRKFFQCICFSGCVRDDKDN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02917 310 Pfam Universal stress protein family 123 233 IPR006016 -
Trre15g02917 310 Coils Coil 176 196 - -
Trre15g02917 310 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 62 304 - -
Trre15g02917 310 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 123 234 - -
Trre15g02917 310 Gene3D HUPs 118 245 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02917 Trre-Chr15 25516323 25518440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02917 105 270 U-box Gene Family AT3G61390 31.395 8.26e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02917 - - pvu:PHAVU_003G204300g 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02917 15 25516323 25518440 Trre15g02917 15 25516323 25518440 ECH