Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02916 ATGAACCCTTACGACAGTCGTTACTCCGATTCCACTTCTTTTCGCGGCCGCCGCAGTGATCTGGTTGGTCCTATGCCGCCGCCTAATTTCGGCCGCGGAGGTCCTGCTCCGTACAGTGCTCCTTATGCAGCACACGCACCTACCGGTTTCGGATCCGCACCTGGTACCCCTATTCCTCACTTTCTGCCTCCTCCTGGTGGCGGTGGATTTAGTGTAGGTCATGGTGGTGGTGGTAGTTATGGTTCTAGACCGGGCAACGGTCACGCGGGTGATAGAAAGTATGACACGGGTCGTTATGGTGGTAGTAGTGGTGGAAGAGGTCGTGGTGGTGGTGCTGGTGGTAGAGGTGGAAGTCAAGGTTTTAGAGGCTCTGGTAGAGGAGGTAGTGGAGGGAGAGGTGGTGGGTTTGGAGGTAGACATGGATCTTCTAAGGATGATTTGAATAACATTAATCTTCCAAAGCAAGATTTTAGGAATTTGGTACCTTTTCAGAAGAATTTCTATGTTGAAAGTCCTCAGATACAAGCTATGTCTGATATTCAAGTTATGCAGTACAGACTTAGTAGGGATATCACTGTCGAAGGGCATGATGTGCCGAAGCCAATTCGGTCTTTTCATGAGGCTAATTTTCCTGATTACTGTCTTGATGTAATTGCCAAGTTGGGTTTTGTTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTACCGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGTCATATCTACTTCCTGCTTTAGTTCATGTCAGTGCACAACCTCGATTGGCACAAGGGGAAGGTCCTATTGTCTTGGTTTTAGCGCCAACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAATTTGGGTCACGATCAAGTATTAAATGTACATGCATATACGGCGGTGCTCCAAAGGGGCCACAAATCCGTGACCTTAGAATGGGTGTTGAGATTGTTATTGCTACTCCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTGCAGAGAGTGACATACCTTGTCTTAGACGAAGCTGATCGAATGTTGGATATGGGTTTTGAACCTCAGATTCGGAAGATTGTAAACCAGATTCGTCCAGATAGGCAGACATTATACTGGAGTGCGACGTGGCCAAAGGAGGTTGAAACTCTTGCAAGACAGTTTCTGCAGAACCCATATAAGGTAGTTATTGGATCACCATATCTAAAAGCAAATCAATCAATAAATCAAGTTGTTGAAGTTGTCACTGACATGGAGAAATATAACAGATTGATCAAGCTGCTGAAAGAAGTGATGGATGGGAACCGAATTCTAATATTTACTGAAACAAAAAAGGGATGTGACCAAATTACAAAACAATTGAGAATGGATGGATGGCCAGCATTATCCATTCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTTTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATTATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGATATAAAATGCGTGGTCAACTATGATTTTCCATCAAGCCTTGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCCAAAGGAACTGCATACAGTTTTTTTACCCGTGCTAATGCCAAGTATGCTAAGGATTTGATTAAGATCTTGCAAGATGCTGGTCAGATTGTTAGTCCTGCATTGTCTGAATTGACTCGGTCAGCTGGCTTTGGTCAACAGGCAGCAAGGGGAGGCTTTCGATCAAGAGGACGAGGAGGAGGCTATGGCAATCGGGGTTCAACATCGGGTTCCAATGCCATTCCTGTAGGCGGGAAGAGGCCTTGGCAGTCTCGGTAG 1887 0.4584 MNPYDSRYSDSTSFRGRRSDLVGPMPPPNFGRGGPAPYSAPYAAHAPTGFGSAPGTPIPHFLPPPGGGGFSVGHGGGGSYGSRPGNGHAGDRKYDTGRYGGSSGGRGRGGGAGGRGGSQGFRGSGRGGSGGRGGGFGGRHGSSKDDLNNINLPKQDFRNLVPFQKNFYVESPQIQAMSDIQVMQYRLSRDITVEGHDVPKPIRSFHEANFPDYCLDVIAKLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLSYLLPALVHVSAQPRLAQGEGPIVLVLAPTRELAVQIQQEAMKFGSRSSIKCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVETLARQFLQNPYKVVIGSPYLKANQSINQVVEVVTDMEKYNRLIKLLKEVMDGNRILIFTETKKGCDQITKQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFTRANAKYAKDLIKILQDAGQIVSPALSELTRSAGFGQQAARGGFRSRGRGGGYGNRGSTSGSNAIPVGGKRPWQSR 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02916 628 SMART ultradead3 222 425 IPR014001 -
Trre15g02916 628 MobiDBLite consensus disorder prediction 64 151 - -
Trre15g02916 628 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 355 363 IPR000629 -
Trre15g02916 628 SMART helicmild6 462 543 IPR001650 -
Trre15g02916 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 286 IPR027417 -
Trre15g02916 628 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 203 231 IPR014014 GO:0003724
Trre15g02916 628 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 437 582 IPR001650 -
Trre15g02916 628 Gene3D - 166 413 IPR027417 -
Trre15g02916 628 Pfam Helicase conserved C-terminal domain 433 543 IPR001650 -
Trre15g02916 628 CDD SF2_C_DEAD 422 552 - -
Trre15g02916 628 FunFam probable ATP-dependent RNA helicase DDX17 165 412 - -
Trre15g02916 628 Gene3D - 414 585 IPR027417 -
Trre15g02916 628 MobiDBLite consensus disorder prediction 590 628 - -
Trre15g02916 628 Pfam DEAD/DEAH box helicase 227 398 IPR011545 GO:0003676|GO:0005524
Trre15g02916 628 MobiDBLite consensus disorder prediction 1 36 - -
Trre15g02916 628 CDD DEADc_DDX5_DDX17 215 410 - -
Trre15g02916 628 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 234 409 IPR014001 -
Trre15g02916 628 FunFam ATP-dependent RNA helicase RhlB 413 585 - -
Trre15g02916 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 563 IPR027417 -
Trre15g02916 628 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 176 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02916 Trre-Chr15 25507845 25512142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02916 191 581 Eukaryotic Initiation Factors Gene Family AT3G19760 34.949 1.25e-68 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02916 K12823 - gmx:100777610 862.062