Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02912 ATGGCATCATCATCATCATCATCCAGCTCTTACAATTCACCATGTGCTGCCTGCAAATTCTTGAGGAGAAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCTCAAAAGTTTGCAAACGTTCACAAAATATTTGGTGCTAGCAATGTCACAAAGCTTCTCAACGAACTCCTCCCTCAACAAAGGGAAGATGCAGTGAACTCACTTGCCTATGAAGCAGAAGCAAGAGTGAGAGACCCAGTTTATGGCTGTGTAGGTGCTATTTCTTTCCTCCAAAAACAAGTTCAGAGGCTTCAAAAAGAACTTGATGCTGCTAACACTGATCTTCTTCGCTATTCCCTCACTGATCATATCCCTCCGGCACCGACGTCTCTTTCTGTGCCTCCACTAGTGGTATCAGTTCAACAAATGCCACAAAGATCAGAGTTAAGTCCAAGAAATGAAGGAGGTGGATTTTTTGGACAGTCTTCAAATACTACCAATTATTCTTTTCCATATTCTCTTCCTTGGACTGATTCTTCCTCTGAGGATATGAGTGAGGGTGGAGGAGGAGGAGGAGGAAATCATAATGTATAA 591 0.4298 MASSSSSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQKQVQRLQKELDAANTDLLRYSLTDHIPPAPTSLSVPPLVVSVQQMPQRSELSPRNEGGGFFGQSSNTTNYSFPYSLPWTDSSSEDMSEGGGGGGGNHNV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02912 196 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Trre15g02912 196 MobiDBLite consensus disorder prediction 155 183 - -
Trre15g02912 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 138 - -
Trre15g02912 196 Pfam Lateral organ boundaries (LOB) domain 14 110 IPR004883 -
Trre15g02912 196 Coils Coil 93 120 - -
Trre15g02912 196 MobiDBLite consensus disorder prediction 141 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02912 Trre-Chr15 25428147 25428737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02912 5 181 AS2 family AT5G63090 65.000 2.22e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre15g02912 LOB 3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02912 - - mtr:25493732 276.944