Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02876 ATGCAGGCTACGCTTTTACCTCTCACCCCTTCTCTTTCTCTCTACAAATCTCTCTCTTCATCTCCTTCTTCCACTTTCAATCCTTCTTTCTCTTCTTCTTCTTCTTTCCCATCATCATGGAAATTACCTCCTGTTTCTTCTTATTCTTCAAAACTAATCTCCTTGACACCCCTCCATTCATCCAACCATTTACAAACCAAAGCAACAACCACCGCGGCCGCCGACTCCTCCTCCTCCTCTTCAGACAGCAGCAGTCTATTCAAAGCTCTAGAGCTTGGAATCCTTTTTTGCCTATGGTTCACCTTTAACATCTACTTTAATATCTACAACAAACAGGTCTTGAAGGTTTATCATTTACCTGTAACACTCACTGCGTTTCAATTTGCTATTGGGACACTCCTTGTAGCATTCATGTGGGGTCTTAATCTTTATAAAAGGCCAAGACTCACTTCTTCACAGCTTTTAGCAATATTTCCATTGGCTTTGGTACATACATTAGGGAACCTTTTCACTAATATGAGTCTTGGAATGGTTGCTGTCTCTTTTACACATACTGTTAAATCAATGGAGCCTTTCTTTTCTGTCCTTCTGTCTTCTATGTTCCTTGGAGAGATGCCTACAGCATGGGTGGTTGGTTCCCTTGTGCCTATTGCTGGTGGAGTGGCGCTGGCATCTGCTACGGAGGCCTCTTTCAATTGGGTTGGATTTTTGAGTGCAATGGCTTCCAATTTGACGAATCAATCTCGTAATGTTCTTAGCAAAAAACTCATGGTTAACAAGGAGGAATCCGTGGACAACATAACACTCTTCTCAATAATAACAGTCATGTCATTCTTCCTATCATTACCTCTAGCTATCTTCATGGAGGGTGTCAAATTTACCCCTACTTACCTTCAATCCGCAGGATTAGATGTTCAACAAGTGTACATAAGATCTCTTCTTGCTGCACTATGCTTCCACGCGTATCAGCAAGTTGCTTATATGATACTGCAAAGGGTATCACCTGTTACACATTCAGTAGCAAACTGTCTGAAACGTGTGATAGTTATAGTGAGCTCCGTCATTTTTTTCCAAACACCCGTCTCACCAATTAATGCATTAGGAACTGGTATAGCTATTTCTGGTGTTTTCCTATATTCCAGGGTAAACCGAATTAAGCCTAAGACAGATTAA 1173 0.4118 MQATLLPLTPSLSLYKSLSSSPSSTFNPSFSSSSSFPSSWKLPPVSSYSSKLISLTPLHSSNHLQTKATTTAAADSSSSSSDSSSLFKALELGILFCLWFTFNIYFNIYNKQVLKVYHLPVTLTAFQFAIGTLLVAFMWGLNLYKRPRLTSSQLLAIFPLALVHTLGNLFTNMSLGMVAVSFTHTVKSMEPFFSVLLSSMFLGEMPTAWVVGSLVPIAGGVALASATEASFNWVGFLSAMASNLTNQSRNVLSKKLMVNKEESVDNITLFSIITVMSFFLSLPLAIFMEGVKFTPTYLQSAGLDVQQVYIRSLLAALCFHAYQQVAYMILQRVSPVTHSVANCLKRVIVIVSSVIFFQTPVSPINALGTGIAISGVFLYSRVNRIKPKTD 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02876 390 Pfam Triose-phosphate Transporter family 91 380 IPR004853 -
Trre15g02876 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 304 383 - -
Trre15g02876 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 136 225 - -
Trre15g02876 390 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 90 388 IPR004696 GO:0016020|GO:0022857|GO:0055085
Trre15g02876 390 PANTHER SOLUTE CARRIER FAMILY 35 92 383 - -
Trre15g02876 390 MobiDBLite consensus disorder prediction 18 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02876 Trre-Chr15 24992649 24995327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02876 17 388 Antiporters AT5G33320 63.830 1.07e-165 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02876 K15283 - gmx:100780925 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02876 15 24992649 24995327 Trre5g02702 5 21423477 21426490 ECH
Trre15g02876 15 24992649 24995327 Trre15g02876 15 24992649 24995327 ECH
Trre15g02876 15 24992649 24995327 Trre5g02702 5 21423477 21426490 PCT