Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02875 ATGTTTCCTTCGATTCCTGTTACACTTAATTCTCTCATGGTTCTTGAGACGAATCTTAGAGAAAACTATGCCTCACAATCACAACCAATACATTTGCAAGAAAACTACTTAAAGCCAAGGATGAAAGATGAGTTAATACCTTTTGGTGCTCATTCCTCGCAGGGTAATTTCTTGCAAGATTTTCACCATATTGATCAATTTCATGTGCATGGCTCCTCATCCTCCAATCAAGTTTTTGGGGTCCAAACACAAAATTTTGATCCTTTTGGTAATGCAGAATGTGGAAATACAGATTTTGAAGTTTATGATGGAAAGCCTTTTGGTGAGAATAATATTAATGGTAGTGAGCATGCTCAACTTATTGACAATTTTCAATATGATGGTTATAGTTTGAATATCCCTAGAAGGAATCATATTGATCTTATGGTTGAAAACCATAGTTATTTTCCCTTTAATAATCCTTCAGAAACCAAGCCATTGAATTATGTTGTACCAGATGACGAAGTTTCAAGCATAACACCAACAAATTATTACCAAAGAGCTGGGTTGAATAGAAACAACAGGTTATTATCTCCTACCACAAGAAGAGCATTTAAAGCAAGAAAGAAATCAAACATAGTGAAGGGGCAATGGACAGTGGATGAAGATAGATTGTTGATTCAAATGGTTGAACAATATGGAATGAGGAAGTGGTCTCATATTGCTCAGAAGTTACCTGGAAGAATAGGGAAACAGTGCAGAGAAAGATGGCATAACCATTTAAGGCCTGATATTAAGAAAGACATATGGACTGATGAAGAGGATAAGATATTGATCCAAGCTCATTCAGAGATAGGAAATAAATGGGCAGAGATCGCGAAAAGATTGCCAGGAAGAACTGAGAACTCAATAAAAAACCATTGGAACGCAACAAAGAGAAGGCAATATTCTAAAAGAAAATGTCGCTCAAAGTACCCTAGAGGCACTCTTCTGCAGGACTATATCAAAAGCTTGAATTTGGACCAAAATCCACCAAGAGACTTTCGAAAAAGATCTTCAGCTAATGCAAAAAAAACAGTTACTTGTAGCACAAGTAAAGCAGCAACACAACAAATTCCACAGCCACAGATTGCAAATGAGTTTTGTCCCAATGACCGACCGGTGCCAAACTACGAGTTTAATGATTTTTGTTTGGATGATAATTTGTTTGAAGAAGGGTGTGGTATTGATTCTCTGCTAGATGAAATGTCAAGTGTTCCTACTACGGATGAGAAAGATGTTGAAGAAAAACAACAATGTGATAAGGAAAGCATGCAAGTTAATCTTGAAGAGCAACAATTTGAGACACAAGTTGAAATTAAGAAGGAGTTGGATTTGGCGGAGATGATCTCTCAGGTTAATCAAAGTAATTGA 1392 0.3649 MFPSIPVTLNSLMVLETNLRENYASQSQPIHLQENYLKPRMKDELIPFGAHSSQGNFLQDFHHIDQFHVHGSSSSNQVFGVQTQNFDPFGNAECGNTDFEVYDGKPFGENNINGSEHAQLIDNFQYDGYSLNIPRRNHIDLMVENHSYFPFNNPSETKPLNYVVPDDEVSSITPTNYYQRAGLNRNNRLLSPTTRRAFKARKKSNIVKGQWTVDEDRLLIQMVEQYGMRKWSHIAQKLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQDYIKSLNLDQNPPRDFRKRSSANAKKTVTCSTSKAATQQIPQPQIANEFCPNDRPVPNYEFNDFCLDDNLFEEGCGIDSLLDEMSSVPTTDEKDVEEKQQCDKESMQVNLEEQQFETQVEIKKELDLAEMISQVNQSN 463
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02875 463 Pfam Myb-like DNA-binding domain 208 254 IPR001005 -
Trre15g02875 463 Pfam Myb-like DNA-binding domain 263 302 IPR001005 -
Trre15g02875 463 SUPERFAMILY Homeodomain-like 205 301 IPR009057 -
Trre15g02875 463 ProSiteProfiles Myb-like domain profile. 255 305 IPR001005 -
Trre15g02875 463 FunFam Transcriptional activator Myb isoform A 207 260 - -
Trre15g02875 463 CDD SANT 211 254 IPR001005 -
Trre15g02875 463 ProSiteProfiles Myb-like domain profile. 203 254 IPR001005 -
Trre15g02875 463 Gene3D - 261 322 - -
Trre15g02875 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 258 IPR017930 -
Trre15g02875 463 Gene3D - 207 260 - -
Trre15g02875 463 FunFam Transcription factor MYB119 261 325 - -
Trre15g02875 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 309 IPR017930 -
Trre15g02875 463 SMART sant 259 307 IPR001005 -
Trre15g02875 463 SMART sant 207 256 IPR001005 -
Trre15g02875 463 CDD SANT 263 305 IPR001005 -
Trre15g02875 463 PANTHER MYB PROTEIN-RELATED 180 364 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre15g02875 Trre-Chr15 24988535 24990442 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02875 21 409 MYB Transcription Factor Family AT4G18770 44.651 3.57e-96 295
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g02875 Myb_DNA-binding 8.6e-17 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02875 K09422 - gmx:100816653 595.89